Wall clock time and date at job start Mon Mar 30 2020 03:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86792 * 119.99943 * 2 1 4 4 H 1.48503 * 109.47274 * 239.99678 * 3 2 1 5 5 H 1.48506 * 109.47418 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47126 * 119.99706 * 3 2 1 7 7 C 1.37875 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99779 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00275 * 0.02562 * 7 2 1 10 10 O 1.42098 * 103.00195 * 286.87192 * 9 7 2 11 11 C 1.76204 * 102.99927 * 179.97438 * 9 7 2 12 12 C 1.38265 * 119.92104 * 269.97798 * 11 9 7 13 13 C 1.38152 * 120.11429 * 180.02562 * 12 11 9 14 14 C 1.38832 * 119.94502 * 359.74921 * 13 12 11 15 15 N 1.39844 * 120.07619 * 180.25332 * 14 13 12 16 16 C 1.39077 * 119.83954 * 0.50095 * 14 13 12 17 17 F 1.35104 * 120.05361 * 179.77065 * 16 14 13 18 18 C 1.38280 * 119.88835 * 359.50104 * 16 14 13 19 19 H 0.97001 * 119.99695 * 0.02562 * 1 2 3 20 20 H 1.08007 * 119.94458 * 0.04549 * 12 11 9 21 21 H 1.08003 * 120.02687 * 180.02562 * 13 12 11 22 22 H 0.97007 * 119.99498 * 180.25057 * 15 14 13 23 23 H 0.96997 * 120.00429 * 0.25700 * 15 14 13 24 24 H 1.08000 * 119.97477 * 180.22777 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.6152 -2.7957 1.3253 11 6 2.4123 -3.9217 0.0005 12 6 2.9164 -4.3924 -1.1978 13 6 3.9264 -5.3349 -1.2025 14 6 4.4398 -5.8065 -0.0019 15 7 5.4658 -6.7567 -0.0034 16 6 3.9276 -5.3355 1.2023 17 9 4.4207 -5.7949 2.3732 18 6 2.9166 -4.3921 1.1991 19 1 -0.4850 0.8401 -0.0004 20 1 2.5201 -4.0223 -2.1319 21 1 4.3194 -5.7013 -2.1394 22 1 5.8211 -7.0881 0.8362 23 1 5.8223 -7.0843 -0.8439 24 1 2.5203 -4.0227 2.1334 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088066270.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:27 Heat of formation + Delta-G solvation = -101.126570 kcal Electronic energy + Delta-G solvation = -13308.985723 eV Core-core repulsion = 10647.513143 eV Total energy + Delta-G solvation = -2661.472580 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.84877 -39.86952 -35.87323 -35.46160 -34.84822 -31.42847 -29.54717 -27.81119 -23.95916 -23.25563 -20.15052 -18.96143 -18.19941 -17.86003 -17.29229 -16.71176 -16.64653 -16.04247 -15.68060 -15.19684 -14.75175 -14.37629 -13.81973 -13.54370 -13.24239 -13.06754 -12.77253 -12.57000 -12.24754 -12.09740 -11.70625 -11.03685 -10.46783 -9.76506 -9.04654 -8.68364 -8.24020 -6.90359 0.28097 0.31219 1.33235 1.37441 1.46375 1.97802 2.38059 2.67630 2.79665 2.83115 3.30497 3.59509 3.81164 4.08224 4.38190 4.50776 4.76561 4.96189 5.15000 5.25083 5.45531 5.60303 5.88695 6.15161 6.39494 6.89006 7.03832 8.46945 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.039169 B = 0.007812 C = 0.007634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.684737 B = 3583.589686 C = 3667.030826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.965 3.035 4 H -0.243 1.243 5 H -0.265 1.265 6 H -0.287 1.287 7 C -0.850 4.850 8 H 0.071 0.929 9 S 1.451 4.549 10 O -0.986 6.986 11 C -0.493 4.493 12 C -0.005 4.005 13 C -0.181 4.181 14 C 0.210 3.790 15 N -0.857 5.857 16 C -0.031 4.031 17 F -0.158 7.158 18 C -0.075 4.075 19 H 0.288 0.712 20 H 0.179 0.821 21 H 0.180 0.820 22 H 0.404 0.596 23 H 0.419 0.581 24 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.520 -9.941 -9.350 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.787 3.213 4 H -0.166 1.166 5 H -0.189 1.189 6 H -0.213 1.213 7 C -0.989 4.989 8 H 0.090 0.910 9 S 1.652 4.348 10 O -0.981 6.981 11 C -0.590 4.590 12 C -0.025 4.025 13 C -0.205 4.205 14 C 0.102 3.898 15 N -0.398 5.398 16 C -0.056 4.056 17 F -0.137 7.137 18 C -0.096 4.096 19 H 0.098 0.902 20 H 0.196 0.804 21 H 0.197 0.803 22 H 0.233 0.767 23 H 0.251 0.749 24 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.375 -10.054 -9.296 15.553 hybrid contribution 2.104 0.951 2.841 3.661 sum 9.480 -9.103 -6.455 14.642 Atomic orbital electron populations 1.69903 1.07641 1.30727 1.44598 1.25626 0.95407 1.03296 0.89630 0.85538 0.78997 0.77261 0.79547 1.16600 1.18918 1.21276 1.27858 1.01995 1.07916 1.61170 0.91026 1.66708 0.83553 0.81444 1.03045 1.92677 1.74621 1.86900 1.43949 1.28383 1.18348 1.16179 0.96106 1.21190 0.92336 0.91841 0.97104 1.21099 1.00851 1.02071 0.96432 1.17910 0.89612 0.90277 0.91995 1.42304 1.39368 1.45654 1.12455 1.17434 1.02548 1.04769 0.80853 1.91352 1.87264 1.88334 1.46767 1.20800 0.94464 0.95221 0.99123 0.90200 0.80383 0.80320 0.76720 0.74881 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.58 13.19 21.45 0.28 -50.30 14 2 C 0.07 3.84 5.46 84.65 0.46 4.30 14 3 Si 0.96 42.42 29.54 68.60 2.03 44.45 14 4 H -0.24 -9.67 7.11 99.48 0.71 -8.96 14 5 H -0.26 -10.89 7.11 99.48 0.71 -10.19 14 6 H -0.29 -13.19 7.11 99.48 0.71 -12.48 14 7 C -0.85 -47.24 9.34 67.73 0.63 -46.60 14 8 H 0.07 3.95 7.81 -2.91 -0.02 3.93 14 9 S 1.45 72.41 13.38 -56.49 -0.76 71.65 14 10 O -0.99 -63.15 16.46 -148.98 -2.45 -65.60 14 11 C -0.49 -20.98 5.60 22.29 0.12 -20.85 14 12 C -0.01 -0.15 9.74 22.26 0.22 0.06 14 13 C -0.18 -4.52 9.90 22.39 0.22 -4.29 14 14 C 0.21 6.07 6.76 38.21 0.26 6.32 14 15 N -0.86 -16.60 9.10 -51.21 -0.47 -17.07 14 16 C -0.03 -1.21 7.31 22.48 0.16 -1.05 14 17 F -0.16 -6.05 16.64 44.97 0.75 -5.30 14 18 C -0.08 -3.51 9.42 22.29 0.21 -3.30 14 19 H 0.29 14.95 8.31 -92.71 -0.77 14.18 14 20 H 0.18 3.82 8.06 -2.91 -0.02 3.80 14 21 H 0.18 2.63 8.06 -2.91 -0.02 2.60 14 22 H 0.40 7.49 8.32 -92.70 -0.77 6.72 14 23 H 0.42 4.98 8.84 -92.71 -0.82 4.16 14 24 H 0.09 4.86 7.30 -2.91 -0.02 4.84 14 Total: -1.00 -80.33 239.87 1.34 -78.98 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -0.33 Total: 8.58 kcal Atomic # 6 Polarization: -67.69 SS G_CDS: 2.29 Total: -65.40 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -0.18 Total: -67.36 kcal Atomic # 8 Polarization: -63.15 SS G_CDS: -2.45 Total: -65.60 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.75 Total: -5.30 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 72.41 SS G_CDS: -0.76 Total: 71.65 kcal Total: -80.33 1.34 -78.98 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088066270.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.144 kcal (2) G-P(sol) polarization free energy of solvation -80.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds