Wall clock time and date at job start Mon Mar 30 2020 03:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99882 * 2 1 4 4 H 1.48506 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47345 * 300.00047 * 3 2 1 6 6 H 1.48501 * 109.47274 * 59.99795 * 3 2 1 7 7 C 1.37879 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99981 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47709 * 300.00592 * 9 7 2 11 11 N 1.46906 * 109.46749 * 60.00217 * 9 7 2 12 12 C 1.50700 * 109.47350 * 180.02562 * 9 7 2 13 13 C 1.38222 * 120.00187 * 265.00880 * 12 9 7 14 14 C 1.38206 * 120.04037 * 179.97438 * 13 12 9 15 15 C 1.38377 * 120.03608 * 0.02562 * 14 13 12 16 16 Cl 1.73607 * 120.00035 * 180.02562 * 15 14 13 17 17 C 1.38295 * 120.00193 * 359.97438 * 15 14 13 18 18 C 1.38450 * 119.99629 * 84.99951 * 12 9 7 19 19 F 1.35092 * 120.01788 * 0.03055 * 18 12 9 20 20 H 0.96999 * 120.00006 * 359.97438 * 1 2 3 21 21 H 1.00907 * 110.99937 * 59.99865 * 11 9 7 22 22 H 1.00904 * 110.99913 * 183.94852 * 11 9 7 23 23 H 1.08005 * 119.98233 * 0.02562 * 13 12 9 24 24 H 1.08001 * 119.97690 * 179.97438 * 14 13 12 25 25 H 1.07997 * 120.02489 * 179.73130 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5572 0.8896 11 7 0.4061 -2.5767 -1.1998 12 6 2.2304 -3.6446 -0.0005 13 6 2.6004 -4.2376 -1.1930 14 6 3.4988 -5.2878 -1.1940 15 6 4.0286 -5.7472 -0.0010 16 17 5.1576 -7.0660 -0.0034 17 6 3.6596 -5.1550 1.1930 18 6 2.7596 -4.1028 1.1940 19 9 2.3979 -3.5237 2.3597 20 1 -0.4850 0.8400 0.0004 21 1 0.9639 -2.5250 -2.0391 22 1 -0.1578 -3.4134 -1.1913 23 1 2.1878 -3.8796 -2.1247 24 1 3.7869 -5.7507 -2.1263 25 1 4.0695 -5.5161 2.1246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095662426.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:02 Heat of formation + Delta-G solvation = -28.246446 kcal Electronic energy + Delta-G solvation = -13511.471601 eV Core-core repulsion = 10851.115634 eV Total energy + Delta-G solvation = -2660.355967 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.28604 -38.88690 -36.45743 -34.57659 -31.76192 -30.30950 -29.21180 -26.12717 -23.30132 -22.26830 -20.29084 -17.41417 -16.60062 -16.11060 -15.53624 -14.97915 -14.64008 -14.27787 -13.95908 -13.46337 -12.95104 -12.89065 -12.53795 -12.00600 -11.41069 -11.08102 -11.00410 -10.87169 -10.75983 -10.59234 -9.90025 -9.37409 -8.62506 -8.50272 -8.00303 -7.25793 -5.94203 -4.10192 1.42837 1.45219 2.20791 3.30434 3.38630 3.42316 3.85115 4.45117 4.76038 5.00097 5.18721 5.30694 5.49680 5.60826 5.86018 6.16281 6.27180 6.30971 6.55310 6.66118 7.17671 7.32558 7.83046 8.06592 8.49451 8.87304 9.03493 9.58871 11.10144 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.040413 B = 0.007280 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.677451 B = 3845.474714 C = 3934.189428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.085 3.915 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.254 3.746 10 H 0.056 0.944 11 N -0.808 5.808 12 C -0.099 4.099 13 C -0.094 4.094 14 C -0.120 4.120 15 C -0.032 4.032 16 Cl -0.080 7.080 17 C -0.152 4.152 18 C 0.112 3.888 19 F -0.127 7.127 20 H 0.257 0.743 21 H 0.319 0.681 22 H 0.301 0.699 23 H 0.136 0.864 24 H 0.130 0.870 25 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.022 -10.697 -1.223 12.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.122 4.122 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.144 3.856 10 H 0.073 0.927 11 N -0.334 5.334 12 C -0.103 4.103 13 C -0.112 4.112 14 C -0.139 4.139 15 C -0.059 4.059 16 Cl -0.052 7.052 17 C -0.171 4.171 18 C 0.092 3.908 19 F -0.105 7.105 20 H 0.067 0.933 21 H 0.132 0.868 22 H 0.111 0.889 23 H 0.154 0.846 24 H 0.148 0.852 25 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.572 -9.983 -0.915 11.469 hybrid contribution 1.172 -0.007 0.017 1.172 sum 6.744 -9.990 -0.898 12.087 Atomic orbital electron populations 1.70105 1.05697 1.25820 1.46246 1.24925 0.94682 0.98627 0.93950 0.86640 0.80251 0.84048 0.77595 1.19827 1.20947 1.20956 1.20756 0.92184 0.89054 1.55034 0.92749 1.18231 0.87419 0.88385 0.91534 0.92651 1.59142 1.27884 1.42225 1.04186 1.22129 0.99082 0.98102 0.90950 1.20857 0.97152 0.94967 0.98264 1.20982 0.98354 0.98067 0.96529 1.20363 0.97308 0.93685 0.94537 1.98336 1.60660 1.47229 1.98953 1.20878 1.00312 0.97752 0.98177 1.17356 0.97506 0.93670 0.82248 1.91508 1.90136 1.83215 1.45653 0.93334 0.86753 0.88857 0.84609 0.85179 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.16 12.77 55.43 0.71 -23.45 15 2 C 0.09 2.35 5.39 -17.82 -0.10 2.25 15 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 15 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 7 C -0.53 -14.33 8.71 -34.44 -0.30 -14.63 15 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.25 6.11 2.62 -70.01 -0.18 5.92 15 10 H 0.06 1.50 7.79 -51.93 -0.40 1.09 15 11 N -0.81 -17.90 8.13 -6.65 -0.05 -17.95 15 12 C -0.10 -2.00 4.99 -104.55 -0.52 -2.52 15 13 C -0.09 -1.59 9.27 -39.60 -0.37 -1.95 15 14 C -0.12 -1.79 9.83 -39.54 -0.39 -2.18 15 15 C -0.03 -0.49 6.32 -39.51 -0.25 -0.74 15 16 Cl -0.08 -1.04 28.96 -51.86 -1.50 -2.54 15 17 C -0.15 -2.48 9.81 -39.48 -0.39 -2.87 15 18 C 0.11 2.19 7.24 -39.42 -0.29 1.90 15 19 F -0.13 -2.66 16.57 2.25 0.04 -2.63 15 20 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 21 H 0.32 6.56 7.21 -39.29 -0.28 6.28 15 22 H 0.30 5.87 9.06 -39.29 -0.36 5.51 15 23 H 0.14 2.10 6.29 -52.48 -0.33 1.77 15 24 H 0.13 1.58 8.06 -52.49 -0.42 1.16 15 25 H 0.14 1.94 8.06 -52.49 -0.42 1.52 15 LS Contribution 243.97 15.07 3.68 3.68 Total: -1.00 -28.52 243.97 -6.69 -35.21 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -1.76 Total: 6.38 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.78 Total: -14.81 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.65 Total: -41.40 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.52 -6.69 -35.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095662426.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.964 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds