Wall clock time and date at job start Mon Mar 30 2020 03:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99882 * 2 1 4 4 H 1.48506 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47345 * 300.00047 * 3 2 1 6 6 H 1.48501 * 109.47274 * 59.99795 * 3 2 1 7 7 C 1.37879 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99981 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47709 * 300.00592 * 9 7 2 11 11 N 1.46906 * 109.46749 * 60.00217 * 9 7 2 12 12 C 1.50700 * 109.47350 * 180.02562 * 9 7 2 13 13 C 1.38222 * 120.00187 * 265.00880 * 12 9 7 14 14 C 1.38206 * 120.04037 * 179.97438 * 13 12 9 15 15 C 1.38377 * 120.03608 * 0.02562 * 14 13 12 16 16 Cl 1.73607 * 120.00035 * 180.02562 * 15 14 13 17 17 C 1.38295 * 120.00193 * 359.97438 * 15 14 13 18 18 C 1.38450 * 119.99629 * 84.99951 * 12 9 7 19 19 F 1.35092 * 120.01788 * 0.03055 * 18 12 9 20 20 H 0.96999 * 120.00006 * 359.97438 * 1 2 3 21 21 H 1.00907 * 110.99937 * 59.99865 * 11 9 7 22 22 H 1.00904 * 110.99913 * 183.94852 * 11 9 7 23 23 H 1.08005 * 119.98233 * 0.02562 * 13 12 9 24 24 H 1.08001 * 119.97690 * 179.97438 * 14 13 12 25 25 H 1.07997 * 120.02489 * 179.73130 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5572 0.8896 11 7 0.4061 -2.5767 -1.1998 12 6 2.2304 -3.6446 -0.0005 13 6 2.6004 -4.2376 -1.1930 14 6 3.4988 -5.2878 -1.1940 15 6 4.0286 -5.7472 -0.0010 16 17 5.1576 -7.0660 -0.0034 17 6 3.6596 -5.1550 1.1930 18 6 2.7596 -4.1028 1.1940 19 9 2.3979 -3.5237 2.3597 20 1 -0.4850 0.8400 0.0004 21 1 0.9639 -2.5250 -2.0391 22 1 -0.1578 -3.4134 -1.1913 23 1 2.1878 -3.8796 -2.1247 24 1 3.7869 -5.7507 -2.1263 25 1 4.0695 -5.5161 2.1246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095662426.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:02 Heat of formation + Delta-G solvation = -46.278593 kcal Electronic energy + Delta-G solvation = -13512.253533 eV Core-core repulsion = 10851.115634 eV Total energy + Delta-G solvation = -2661.137900 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.83169 -40.26324 -37.68146 -36.26901 -33.71923 -31.64791 -30.73174 -28.06836 -24.95440 -23.64510 -21.92190 -18.81002 -18.59749 -17.57211 -17.01576 -16.57090 -16.40577 -16.00858 -15.45238 -14.91145 -14.45240 -14.30065 -14.15305 -13.62952 -13.16679 -12.82444 -12.56593 -12.34013 -12.25363 -11.97653 -11.76524 -11.29025 -10.59068 -9.95445 -9.47334 -8.98539 -8.01475 -6.23701 0.07255 0.12098 1.00791 1.41364 1.43737 1.54016 2.40255 2.55185 3.22118 3.38487 3.73458 3.97783 4.04496 4.25156 4.37511 4.61602 4.90784 5.01155 5.14124 5.17747 5.52436 5.71588 5.76320 6.11211 6.59759 7.05587 7.22747 7.48823 9.02103 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.040413 B = 0.007280 C = 0.007115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.677451 B = 3845.474714 C = 3934.189428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.037 3.963 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.044 0.956 9 C 0.261 3.739 10 H 0.011 0.989 11 N -0.817 5.817 12 C -0.126 4.126 13 C -0.090 4.090 14 C -0.106 4.106 15 C -0.027 4.027 16 Cl -0.052 7.052 17 C -0.145 4.145 18 C 0.084 3.916 19 F -0.146 7.146 20 H 0.257 0.743 21 H 0.329 0.671 22 H 0.316 0.684 23 H 0.149 0.851 24 H 0.167 0.833 25 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.672 -11.921 -2.327 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.167 4.167 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.062 0.938 9 C 0.151 3.849 10 H 0.029 0.971 11 N -0.346 5.346 12 C -0.129 4.129 13 C -0.109 4.109 14 C -0.124 4.124 15 C -0.054 4.054 16 Cl -0.023 7.023 17 C -0.164 4.164 18 C 0.064 3.936 19 F -0.125 7.125 20 H 0.066 0.934 21 H 0.143 0.857 22 H 0.128 0.872 23 H 0.167 0.833 24 H 0.184 0.816 25 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.235 -11.222 -2.025 13.504 hybrid contribution 0.734 0.215 0.347 0.840 sum 7.969 -11.007 -1.677 13.692 Atomic orbital electron populations 1.70220 1.06990 1.26483 1.47609 1.25649 0.95453 1.01772 0.93808 0.85677 0.78998 0.80236 0.77626 1.19572 1.20282 1.20841 1.21042 0.91900 0.90828 1.54375 0.93763 1.17742 0.87600 0.89128 0.90435 0.97128 1.58885 1.28262 1.43480 1.03966 1.21788 1.00002 0.98363 0.92778 1.20989 0.97306 0.95185 0.97384 1.21318 0.96541 0.96647 0.97912 1.20528 0.96955 0.93788 0.94146 1.98356 1.59432 1.45606 1.98893 1.21030 0.99114 0.96500 0.99760 1.17661 0.99155 0.95227 0.81530 1.91450 1.90597 1.83839 1.46609 0.93409 0.85660 0.87217 0.83322 0.81593 0.82659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.23 12.77 21.45 0.27 -50.96 15 2 C 0.04 2.07 5.39 84.66 0.46 2.53 15 3 Si 0.95 43.86 29.54 68.60 2.03 45.89 15 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 7 C -0.54 -29.85 8.71 25.60 0.22 -29.63 15 8 H 0.04 2.46 7.74 -2.91 -0.02 2.43 15 9 C 0.26 12.92 2.62 43.42 0.11 13.03 15 10 H 0.01 0.62 7.79 -2.39 -0.02 0.60 15 11 N -0.82 -36.59 8.13 -174.95 -1.42 -38.02 15 12 C -0.13 -5.09 4.99 -19.82 -0.10 -5.19 15 13 C -0.09 -2.89 9.27 22.26 0.21 -2.68 15 14 C -0.11 -2.77 9.83 22.30 0.22 -2.55 15 15 C -0.03 -0.74 6.32 22.32 0.14 -0.60 15 16 Cl -0.05 -1.15 28.96 -2.72 -0.08 -1.23 15 17 C -0.14 -4.48 9.81 22.34 0.22 -4.27 15 18 C 0.08 3.30 7.24 22.37 0.16 3.46 15 19 F -0.15 -6.39 16.57 44.97 0.74 -5.64 15 20 H 0.26 14.27 8.31 -92.71 -0.77 13.50 15 21 H 0.33 13.41 7.21 -89.69 -0.65 12.77 15 22 H 0.32 12.40 9.06 -89.69 -0.81 11.59 15 23 H 0.15 4.29 6.29 -2.91 -0.02 4.27 15 24 H 0.17 3.19 8.06 -2.91 -0.02 3.17 15 25 H 0.16 4.11 8.06 -2.91 -0.02 4.08 15 Total: -1.00 -61.94 243.97 2.97 -58.97 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.22 Total: 16.89 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 1.64 Total: -25.90 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -1.15 Total: -88.98 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.74 Total: -5.64 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -61.94 2.97 -58.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095662426.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.693 kcal (2) G-P(sol) polarization free energy of solvation -61.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds