Wall clock time and date at job start Mon Mar 30 2020 03:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00384 * 2 1 4 4 H 1.48498 * 109.47199 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47128 * 239.99571 * 3 2 1 6 6 H 1.48499 * 109.47324 * 119.99658 * 3 2 1 7 7 C 1.37879 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00020 * 14.83837 * 7 2 1 9 9 C 1.50704 * 120.00032 * 194.83310 * 7 2 1 10 10 H 1.09001 * 109.46892 * 305.59551 * 9 7 2 11 11 N 1.46895 * 109.47253 * 65.58987 * 9 7 2 12 12 C 1.50694 * 109.47185 * 185.59284 * 9 7 2 13 13 C 1.38268 * 119.96913 * 99.99817 * 12 9 7 14 14 C 1.38192 * 120.04755 * 179.97438 * 13 12 9 15 15 C 1.38448 * 119.99177 * 0.02562 * 14 13 12 16 16 F 1.35095 * 120.03152 * 180.02562 * 15 14 13 17 17 C 1.38550 * 119.93495 * 359.97438 * 15 14 13 18 18 Cl 1.73603 * 120.02337 * 180.02562 * 17 15 14 19 19 C 1.38212 * 119.97059 * 279.72557 * 12 9 7 20 20 H 0.96993 * 120.00435 * 174.89473 * 1 2 3 21 21 H 1.00899 * 111.00263 * 299.19452 * 11 9 7 22 22 H 1.00903 * 111.00150 * 63.14623 * 11 9 7 23 23 H 1.08001 * 119.97819 * 359.97438 * 13 12 9 24 24 H 1.08011 * 120.00695 * 179.97438 * 14 13 12 25 25 H 1.08000 * 119.98952 * 359.97438 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6962 -1.2124 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.4914 -2.1139 -0.2386 9 6 3.4738 -1.2158 0.3347 10 1 4.0047 -0.5212 -0.3163 11 7 3.6634 -0.8161 1.7354 12 6 4.0146 -2.6077 0.1318 13 6 4.7098 -2.9171 -1.0226 14 6 5.2068 -4.1929 -1.2101 15 6 5.0083 -5.1622 -0.2417 16 9 5.4944 -6.4094 -0.4239 17 6 4.3117 -4.8515 0.9149 18 17 4.0620 -6.0650 2.1310 19 6 3.8201 -3.5722 1.1024 20 1 -0.4850 -0.8366 -0.0747 21 1 3.3205 0.1194 1.8941 22 1 3.2235 -1.4736 2.3618 23 1 4.8644 -2.1613 -1.7784 24 1 5.7494 -4.4340 -2.1124 25 1 3.2811 -3.3280 2.0059 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095663697.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:51 Heat of formation + Delta-G solvation = -52.512703 kcal Electronic energy + Delta-G solvation = -13419.259340 eV Core-core repulsion = 10757.851110 eV Total energy + Delta-G solvation = -2661.408231 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.97384 -40.37225 -37.72046 -36.52652 -33.95405 -31.93873 -30.90722 -27.76259 -24.63824 -24.00278 -21.72415 -19.82594 -18.87753 -17.84893 -17.16680 -16.78295 -16.24444 -15.69174 -15.15814 -14.93477 -14.71395 -14.51898 -14.26509 -13.87055 -13.49965 -12.69811 -12.53220 -12.37990 -12.07870 -11.93272 -11.81406 -11.35026 -10.64137 -9.97085 -9.70830 -9.43613 -8.66305 -6.50436 -0.00695 0.14819 0.93524 1.47098 1.53957 1.72433 2.43927 2.50467 3.01971 3.06934 3.67074 3.82152 4.06850 4.25155 4.35570 4.56690 4.84601 4.90406 5.03226 5.11766 5.55176 5.70487 5.80161 5.93463 6.36291 6.51820 6.77476 7.32271 8.55984 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.040293 B = 0.007673 C = 0.007149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.751143 B = 3648.233999 C = 3915.491912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.016 4.016 3 Si 1.088 2.912 4 H -0.293 1.293 5 H -0.260 1.260 6 H -0.238 1.238 7 C -0.626 4.626 8 H 0.016 0.984 9 C 0.215 3.785 10 H 0.058 0.942 11 N -0.846 5.846 12 C -0.043 4.043 13 C -0.093 4.093 14 C -0.127 4.127 15 C 0.075 3.925 16 F -0.135 7.135 17 C -0.078 4.078 18 Cl -0.057 7.057 19 C -0.085 4.085 20 H 0.252 0.748 21 H 0.333 0.667 22 H 0.329 0.671 23 H 0.155 0.845 24 H 0.175 0.825 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.317 -6.059 0.088 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.216 4.216 3 Si 0.908 3.092 4 H -0.220 1.220 5 H -0.185 1.185 6 H -0.162 1.162 7 C -0.665 4.665 8 H 0.034 0.966 9 C 0.105 3.895 10 H 0.076 0.924 11 N -0.378 5.378 12 C -0.044 4.044 13 C -0.112 4.112 14 C -0.146 4.146 15 C 0.055 3.945 16 F -0.113 7.113 17 C -0.105 4.105 18 Cl -0.028 7.028 19 C -0.104 4.104 20 H 0.061 0.939 21 H 0.148 0.852 22 H 0.141 0.859 23 H 0.173 0.827 24 H 0.192 0.808 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.900 -4.686 0.117 12.790 hybrid contribution -1.654 -2.267 0.034 2.806 sum 10.246 -6.953 0.152 12.384 Atomic orbital electron populations 1.70984 1.08313 1.30027 1.47292 1.27311 0.96076 1.06353 0.91843 0.83490 0.74684 0.71205 0.79788 1.21965 1.18489 1.16233 1.22778 0.96010 0.94531 1.53209 0.96606 1.18227 0.92583 0.89894 0.88760 0.92421 1.59820 1.65081 1.07294 1.05594 1.20165 0.94332 0.96318 0.93625 1.21266 0.95921 0.96869 0.97136 1.21329 1.02057 0.91669 0.99509 1.17466 1.00480 0.81231 0.95282 1.91484 1.85999 1.38463 1.95373 1.21020 1.05293 0.92027 0.92170 1.98345 1.95718 1.54567 1.54198 1.20719 0.99175 0.90002 1.00503 0.93869 0.85168 0.85916 0.82707 0.80792 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 13.70 21.45 0.29 -55.12 15 2 C -0.02 -0.87 5.41 84.66 0.46 -0.42 15 3 Si 1.09 45.20 26.42 68.60 1.81 47.02 15 4 H -0.29 -12.68 7.11 99.48 0.71 -11.98 15 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 6 H -0.24 -8.53 5.62 99.48 0.56 -7.97 15 7 C -0.63 -32.72 9.04 25.60 0.23 -32.49 15 8 H 0.02 0.93 7.99 -2.91 -0.02 0.91 15 9 C 0.22 9.14 2.48 43.42 0.11 9.24 15 10 H 0.06 2.37 6.71 -2.39 -0.02 2.35 15 11 N -0.85 -33.27 9.09 -174.96 -1.59 -34.86 15 12 C -0.04 -1.64 4.90 -19.87 -0.10 -1.74 15 13 C -0.09 -2.94 9.67 22.27 0.22 -2.73 15 14 C -0.13 -3.49 10.03 22.31 0.22 -3.27 15 15 C 0.08 2.33 7.28 22.39 0.16 2.50 15 16 F -0.13 -4.01 16.84 44.97 0.76 -3.26 15 17 C -0.08 -2.59 6.33 22.36 0.14 -2.45 15 18 Cl -0.06 -1.73 28.62 -2.72 -0.08 -1.81 15 19 C -0.08 -3.09 9.06 22.28 0.20 -2.89 15 20 H 0.25 15.43 8.73 -92.71 -0.81 14.62 15 21 H 0.33 13.09 5.47 -89.69 -0.49 12.60 15 22 H 0.33 12.67 7.22 -89.69 -0.65 12.03 15 23 H 0.16 4.20 8.04 -2.91 -0.02 4.17 15 24 H 0.17 3.46 8.06 -2.90 -0.02 3.44 15 25 H 0.13 4.84 6.59 -2.91 -0.02 4.82 15 Total: -1.00 -59.28 237.48 2.76 -56.52 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.08 Total: 25.75 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 1.64 Total: -34.23 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -1.30 Total: -89.99 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.76 Total: -3.26 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.81 Total: 47.02 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -59.28 2.76 -56.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095663697.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.010 kcal (2) G-P(sol) polarization free energy of solvation -59.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds