Wall clock time and date at job start Mon Mar 30 2020 03:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00307 * 2 1 4 4 H 1.48503 * 109.47008 * 240.00263 * 3 2 1 5 5 H 1.48496 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47134 * 119.99966 * 3 2 1 7 7 C 1.37880 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99815 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47066 * 300.00000 * 9 7 2 11 11 N 1.46893 * 109.47621 * 59.99802 * 9 7 2 12 12 C 1.50706 * 109.47178 * 180.02562 * 9 7 2 13 13 C 1.38238 * 120.00095 * 264.72030 * 12 9 7 14 14 C 1.38223 * 120.04542 * 179.76860 * 13 12 9 15 15 C 1.38259 * 120.06166 * 0.50764 * 14 13 12 16 16 C 1.38280 * 120.01371 * 359.74507 * 15 14 13 17 17 Cl 1.73593 * 120.02736 * 179.97438 * 16 15 14 18 18 C 1.38397 * 120.00915 * 84.99484 * 12 9 7 19 19 F 1.35102 * 120.03198 * 0.02562 * 18 12 9 20 20 H 0.97001 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.00901 * 111.00080 * 296.04737 * 11 9 7 22 22 H 1.00899 * 110.99958 * 59.99981 * 11 9 7 23 23 H 1.07997 * 119.98058 * 0.02562 * 13 12 9 24 24 H 1.08002 * 119.97141 * 180.25758 * 14 13 12 25 25 H 1.07999 * 119.99786 * 179.72766 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6239 -2.5574 0.8880 11 7 0.4068 -2.5762 -1.2014 12 6 2.2302 -3.6447 -0.0015 13 6 2.5965 -4.2411 -1.1935 14 6 3.4982 -5.2887 -1.1948 15 6 4.0273 -5.7486 -0.0031 16 6 3.6586 -5.1573 1.1913 17 17 4.3221 -5.7349 2.6878 18 6 2.7585 -4.1034 1.1926 19 9 2.3964 -3.5251 2.3587 20 1 -0.4850 0.8401 0.0004 21 1 -0.3005 -1.8567 -1.1927 22 1 0.9651 -2.5242 -2.0403 23 1 2.1811 -3.8857 -2.1249 24 1 3.7868 -5.7511 -2.1272 25 1 4.7284 -6.5701 -0.0049 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095668309.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:04 Heat of formation + Delta-G solvation = -51.745961 kcal Electronic energy + Delta-G solvation = -13626.844300 eV Core-core repulsion = 10965.469317 eV Total energy + Delta-G solvation = -2661.374982 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.81195 -40.12509 -37.68294 -36.50490 -33.63949 -31.32298 -30.88599 -28.06088 -25.09193 -23.49176 -21.90642 -18.73907 -18.68921 -17.65592 -17.14039 -16.62896 -16.44749 -15.86965 -15.25723 -14.81586 -14.29962 -14.04007 -13.92196 -13.58587 -13.23862 -12.88400 -12.71193 -12.39499 -12.23117 -12.13373 -11.94757 -11.48266 -10.77561 -9.68222 -9.59208 -9.25047 -8.17931 -6.43864 0.10749 0.28762 1.02287 1.36125 1.37962 1.45847 2.32674 2.65469 3.00255 3.26856 3.84682 4.07090 4.22911 4.35045 4.57506 4.73388 5.03138 5.08585 5.24787 5.42878 5.58423 5.65381 5.87995 5.97388 6.56761 6.82218 7.06655 7.32430 8.77538 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.033201 B = 0.008667 C = 0.007797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.134739 B = 3229.979805 C = 3590.292395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.025 3.975 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.562 4.562 8 H 0.046 0.954 9 C 0.248 3.752 10 H 0.007 0.993 11 N -0.837 5.837 12 C -0.083 4.083 13 C -0.087 4.087 14 C -0.103 4.103 15 C -0.096 4.096 16 C -0.080 4.080 17 Cl -0.060 7.060 18 C 0.070 3.930 19 F -0.147 7.147 20 H 0.270 0.730 21 H 0.348 0.652 22 H 0.324 0.676 23 H 0.145 0.855 24 H 0.179 0.821 25 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.811 -10.004 -2.694 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.602 4.602 8 H 0.064 0.936 9 C 0.137 3.863 10 H 0.024 0.976 11 N -0.367 5.367 12 C -0.085 4.085 13 C -0.105 4.105 14 C -0.121 4.121 15 C -0.114 4.114 16 C -0.108 4.108 17 Cl -0.031 7.031 18 C 0.049 3.951 19 F -0.126 7.126 20 H 0.079 0.921 21 H 0.163 0.837 22 H 0.135 0.865 23 H 0.163 0.837 24 H 0.196 0.804 25 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 7.464 -10.641 -2.234 13.189 hybrid contribution 0.389 2.252 0.690 2.387 sum 7.853 -8.389 -1.544 11.594 Atomic orbital electron populations 1.69821 1.06932 1.28281 1.50207 1.25730 0.95788 1.02371 0.93691 0.85587 0.78448 0.78701 0.78785 1.19059 1.20343 1.20521 1.21896 0.93200 0.92181 1.52897 0.93604 1.17591 0.88942 0.88768 0.90989 0.97553 1.59488 1.17934 1.55474 1.03809 1.20450 0.98403 0.97394 0.92256 1.21206 0.96612 0.95538 0.97143 1.21575 0.95508 0.95783 0.99187 1.21253 1.00679 1.00569 0.88924 1.21104 1.00931 0.98685 0.90046 1.98336 1.84325 1.87707 1.32705 1.17663 0.99982 0.95551 0.81887 1.91435 1.90656 1.83904 1.46615 0.92092 0.83692 0.86526 0.83717 0.80400 0.80969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.82 11.54 21.45 0.25 -50.57 15 2 C 0.03 1.35 5.38 84.66 0.46 1.81 15 3 Si 0.96 43.06 29.54 68.60 2.03 45.09 15 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 15 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 7 C -0.56 -30.85 8.71 25.60 0.22 -30.62 15 8 H 0.05 2.54 7.74 -2.91 -0.02 2.52 15 9 C 0.25 12.70 2.72 43.43 0.12 12.82 15 10 H 0.01 0.39 7.79 -2.39 -0.02 0.37 15 11 N -0.84 -39.06 8.78 -174.96 -1.54 -40.60 15 12 C -0.08 -3.60 5.00 -19.82 -0.10 -3.70 15 13 C -0.09 -2.92 9.27 22.27 0.21 -2.71 15 14 C -0.10 -2.55 10.04 22.27 0.22 -2.33 15 15 C -0.10 -2.45 9.83 22.28 0.22 -2.24 15 16 C -0.08 -2.68 6.33 22.36 0.14 -2.54 15 17 Cl -0.06 -1.79 28.62 -2.72 -0.08 -1.87 15 18 C 0.07 2.93 7.22 22.39 0.16 3.10 15 19 F -0.15 -6.98 16.14 44.97 0.73 -6.26 15 20 H 0.27 14.25 8.31 -92.71 -0.77 13.48 15 21 H 0.35 17.64 7.08 -89.69 -0.63 17.00 15 22 H 0.32 13.62 7.21 -89.69 -0.65 12.97 15 23 H 0.15 4.53 6.29 -2.91 -0.02 4.51 15 24 H 0.18 2.75 8.06 -2.91 -0.02 2.72 15 25 H 0.17 3.03 8.06 -2.91 -0.02 3.01 15 Total: -1.00 -61.10 240.96 3.00 -58.11 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.04 Total: 22.51 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 1.65 Total: -26.42 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -1.29 Total: -91.16 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.73 Total: -6.26 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.87 kcal Total: -61.10 3.00 -58.11 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095668309.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.361 kcal (2) G-P(sol) polarization free energy of solvation -61.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds