Wall clock time and date at job start Mon Mar 30 2020 03:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99727 * 2 1 4 4 H 1.48506 * 109.46784 * 90.00370 * 3 2 1 5 5 H 1.48494 * 109.47373 * 210.00255 * 3 2 1 6 6 H 1.48503 * 109.47330 * 330.00386 * 3 2 1 7 7 C 1.37873 * 120.00561 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00239 * 178.00869 * 7 2 1 9 9 C 1.50699 * 119.99586 * 357.99967 * 7 2 1 10 10 H 1.08994 * 109.47894 * 324.76012 * 9 7 2 11 11 N 1.46899 * 109.46823 * 84.75932 * 9 7 2 12 12 C 1.50700 * 109.47247 * 204.75829 * 9 7 2 13 13 C 1.38256 * 119.94675 * 264.72743 * 12 9 7 14 14 C 1.38180 * 120.11105 * 179.76368 * 13 12 9 15 15 C 1.38704 * 120.01152 * 0.51254 * 14 13 12 16 16 O 1.35949 * 120.04881 * 179.76387 * 15 14 13 17 17 C 1.38836 * 119.90000 * 359.74210 * 15 14 13 18 18 F 1.35103 * 120.05547 * 179.97438 * 17 15 14 19 19 C 1.38448 * 119.95114 * 85.00240 * 12 9 7 20 20 F 1.35096 * 120.00724 * 0.02562 * 19 12 9 21 21 H 0.97000 * 119.99656 * 174.70970 * 1 2 3 22 22 H 1.00902 * 111.00548 * 293.80483 * 11 9 7 23 23 H 1.00898 * 111.00445 * 57.76404 * 11 9 7 24 24 H 1.07995 * 119.94790 * 0.02562 * 13 12 9 25 25 H 1.07996 * 119.99480 * 180.22711 * 14 13 12 26 26 H 0.96701 * 114.00767 * 269.97500 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4002 5 1 3.5466 1.4404 -0.7000 6 1 1.4465 2.6528 -0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0841 -1.1942 -0.0330 9 6 1.2518 -2.4987 0.0444 10 1 0.3616 -2.3835 0.6627 11 7 0.8561 -2.8828 -1.3171 12 6 2.1359 -3.5688 0.6313 13 6 2.8594 -4.4006 -0.2031 14 6 3.6749 -5.3797 0.3315 15 6 3.7606 -5.5365 1.7070 16 8 4.5589 -6.5027 2.2336 17 6 3.0302 -4.7049 2.5451 18 9 3.1109 -4.8551 3.8854 19 6 2.2180 -3.7211 2.0049 20 9 1.5055 -2.9112 2.8183 21 1 -0.4850 -0.8365 -0.0775 22 1 0.1832 -2.2328 -1.6951 23 1 1.6617 -2.9604 -1.9196 24 1 2.7904 -4.2822 -1.2743 25 1 4.2420 -6.0260 -0.3219 26 1 4.1153 -7.3520 2.3634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095671615.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:03 Heat of formation + Delta-G solvation = -115.014000 kcal Electronic energy + Delta-G solvation = -15815.355918 eV Core-core repulsion = 12722.901053 eV Total energy + Delta-G solvation = -3092.454866 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.96846 -47.99609 -39.26677 -36.99506 -34.65482 -31.57349 -30.01693 -28.89716 -25.64561 -23.34312 -22.52309 -20.77900 -18.63598 -17.38907 -17.16189 -16.47108 -16.34737 -15.84170 -15.00843 -14.57049 -14.37976 -13.90976 -13.85547 -13.30857 -13.00427 -12.95309 -12.57239 -11.99697 -11.37595 -11.16712 -10.86318 -10.71086 -10.26817 -10.00602 -9.63854 -8.75291 -8.38538 -8.23353 -7.48393 -6.56782 -4.38337 1.28766 1.34185 3.34545 3.35572 3.51934 3.68224 3.92562 4.37558 4.43181 4.88526 5.00458 5.12895 5.23656 5.49216 5.82650 6.00437 6.18133 6.27699 6.49373 6.64753 6.95308 7.15128 7.62670 7.69438 8.09595 8.24482 8.48603 8.58658 9.35025 10.76866 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.034211 B = 0.008635 C = 0.007985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.243605 B = 3241.874264 C = 3505.852344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.033 3.967 3 Si 1.071 2.929 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.627 4.627 8 H 0.053 0.947 9 C 0.222 3.778 10 H 0.062 0.938 11 N -0.852 5.852 12 C -0.036 4.036 13 C -0.084 4.084 14 C -0.128 4.128 15 C 0.068 3.932 16 O -0.487 6.487 17 C 0.034 3.966 18 F -0.131 7.131 19 C 0.080 3.920 20 F -0.121 7.121 21 H 0.272 0.728 22 H 0.337 0.663 23 H 0.322 0.678 24 H 0.142 0.858 25 H 0.137 0.863 26 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.108 -9.971 0.097 11.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.174 4.174 3 Si 0.898 3.102 4 H -0.211 1.211 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.667 4.667 8 H 0.071 0.929 9 C 0.113 3.887 10 H 0.079 0.921 11 N -0.380 5.380 12 C -0.037 4.037 13 C -0.102 4.102 14 C -0.147 4.147 15 C 0.023 3.977 16 O -0.296 6.296 17 C 0.014 3.986 18 F -0.110 7.110 19 C 0.060 3.940 20 F -0.099 7.099 21 H 0.083 0.917 22 H 0.149 0.851 23 H 0.134 0.866 24 H 0.160 0.840 25 H 0.155 0.845 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.010 -8.541 0.593 9.920 hybrid contribution 0.265 -0.979 0.247 1.044 sum 5.275 -9.521 0.840 10.916 Atomic orbital electron populations 1.70798 1.06809 1.31101 1.44732 1.25926 0.96356 1.02741 0.92407 0.83521 0.74687 0.74822 0.77179 1.21097 1.21303 1.20822 1.22458 0.94935 0.91562 1.57718 0.92888 1.18126 0.93640 0.88830 0.88111 0.92055 1.59592 1.17675 1.55704 1.05030 1.20415 0.97360 0.95918 0.90043 1.20814 0.94845 0.93776 1.00809 1.21287 0.99920 1.00547 0.92959 1.17981 0.95569 0.93585 0.90587 1.84877 1.37501 1.22650 1.84550 1.18043 1.02030 1.00754 0.77805 1.91461 1.95273 1.95169 1.29104 1.17373 0.96112 0.91836 0.88720 1.91523 1.75655 1.70845 1.71861 0.91670 0.85109 0.86649 0.84029 0.84496 0.75868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 13.59 55.43 0.75 -24.82 15 2 C 0.03 0.88 5.46 -17.82 -0.10 0.78 15 3 Si 1.07 24.37 29.90 -169.99 -5.08 19.29 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 7 C -0.63 -16.57 8.57 -34.44 -0.30 -16.87 15 8 H 0.05 1.43 7.81 -52.49 -0.41 1.02 15 9 C 0.22 5.27 2.34 -70.02 -0.16 5.11 15 10 H 0.06 1.64 6.61 -51.93 -0.34 1.30 15 11 N -0.85 -17.71 8.75 -6.65 -0.06 -17.77 15 12 C -0.04 -0.75 5.04 -104.54 -0.53 -1.28 15 13 C -0.08 -1.45 9.26 -39.60 -0.37 -1.82 15 14 C -0.13 -1.92 9.98 -39.43 -0.39 -2.32 15 15 C 0.07 1.10 6.71 -39.19 -0.26 0.84 15 16 O -0.49 -6.67 13.37 -19.58 -0.26 -6.93 15 17 C 0.03 0.65 7.32 -39.25 -0.29 0.36 15 18 F -0.13 -2.50 17.03 2.25 0.04 -2.46 15 19 C 0.08 1.72 7.24 -39.39 -0.29 1.43 15 20 F -0.12 -2.82 16.47 2.25 0.04 -2.79 15 21 H 0.27 7.63 6.32 -40.82 -0.26 7.38 15 22 H 0.34 7.29 8.55 -39.29 -0.34 6.95 15 23 H 0.32 6.14 7.31 -39.29 -0.29 5.86 15 24 H 0.14 2.22 6.33 -52.49 -0.33 1.89 15 25 H 0.14 1.60 8.06 -52.49 -0.42 1.17 15 26 H 0.39 3.23 9.06 45.56 0.41 3.64 15 LS Contribution 242.41 15.07 3.65 3.65 Total: -1.00 -29.82 242.41 -4.37 -34.19 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -0.77 Total: 11.37 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -2.68 Total: -13.75 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.69 Total: -42.59 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.26 Total: -6.93 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.08 Total: -5.24 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.08 Total: 19.29 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.82 -4.37 -34.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095671615.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.824 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds