Wall clock time and date at job start Mon Mar 30 2020 03:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 N 1.46898 * 109.47058 * 60.00265 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38284 * 119.95011 * 264.72946 * 12 9 7 14 14 C 1.38288 * 120.05107 * 179.72821 * 13 12 9 15 15 F 1.35102 * 120.02167 * 180.27370 * 14 13 12 16 16 C 1.38950 * 119.95667 * 0.51630 * 14 13 12 17 17 O 1.35946 * 120.05345 * 179.77140 * 16 14 13 18 18 C 1.38600 * 119.89820 * 359.75558 * 16 14 13 19 19 C 1.38429 * 119.94870 * 359.97438 * 18 16 14 20 20 F 1.35097 * 119.98039 * 179.97438 * 19 18 16 21 21 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 22 22 H 1.00892 * 111.00332 * 60.00049 * 11 9 7 23 23 H 1.00905 * 110.99665 * 183.95824 * 11 9 7 24 24 H 1.07998 * 119.97728 * 359.97184 * 13 12 9 25 25 H 0.96695 * 114.00342 * 269.98421 * 17 16 14 26 26 H 1.07999 * 120.02649 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2304 -3.6445 0.0005 13 6 2.5954 -4.2408 -1.1926 14 6 3.4982 -5.2883 -1.1955 15 9 3.8586 -5.8668 -2.3620 16 6 4.0306 -5.7489 0.0025 17 8 4.9147 -6.7816 0.0023 18 6 3.6591 -5.1535 1.1977 19 6 2.7594 -4.1015 1.1954 20 9 2.3964 -3.5211 2.3601 21 1 -0.4850 -0.8401 -0.0004 22 1 0.9653 -2.5260 -2.0381 23 1 -0.1569 -3.4139 -1.1907 24 1 2.1781 -3.8856 -2.1232 25 1 4.5021 -7.6526 0.0795 26 1 4.0719 -5.5095 2.1300 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095671636.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:54 Heat of formation + Delta-G solvation = -110.211971 kcal Electronic energy + Delta-G solvation = -15734.124280 eV Core-core repulsion = 12641.877646 eV Total energy + Delta-G solvation = -3092.246634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.74336 -48.42621 -39.33309 -37.15037 -34.54141 -31.56370 -29.97133 -28.90728 -25.74466 -23.40168 -22.40161 -20.80067 -18.72417 -17.28385 -17.12779 -16.69631 -16.37875 -15.60060 -14.96559 -14.64590 -14.44912 -14.01009 -13.84474 -13.75989 -13.59482 -12.92429 -12.16543 -11.91425 -11.47825 -11.10927 -10.77948 -10.68483 -10.41265 -10.08212 -9.13050 -8.61695 -8.41061 -7.97942 -7.71977 -6.26931 -4.11519 1.16126 1.19942 3.45116 3.48213 3.52745 3.64527 3.90911 4.34579 4.55598 4.71891 4.83697 5.20336 5.29734 5.42589 5.70102 5.90357 6.06332 6.17706 6.28980 6.37580 6.91309 6.99880 7.52297 7.80636 8.12251 8.51017 8.59094 8.94928 9.71942 11.13450 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.033738 B = 0.008273 C = 0.007781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.723529 B = 3383.601981 C = 3597.773963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.042 3.958 3 Si 1.068 2.932 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.611 4.611 8 H 0.048 0.952 9 C 0.240 3.760 10 H 0.050 0.950 11 N -0.828 5.828 12 C -0.078 4.078 13 C -0.125 4.125 14 C 0.065 3.935 15 F -0.136 7.136 16 C 0.072 3.928 17 O -0.486 6.486 18 C -0.156 4.156 19 C 0.108 3.892 20 F -0.125 7.125 21 H 0.290 0.710 22 H 0.328 0.672 23 H 0.305 0.695 24 H 0.144 0.856 25 H 0.387 0.613 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.854 -11.612 -0.021 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.169 4.169 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.649 4.649 8 H 0.066 0.934 9 C 0.130 3.870 10 H 0.068 0.932 11 N -0.356 5.356 12 C -0.081 4.081 13 C -0.144 4.144 14 C 0.045 3.955 15 F -0.115 7.115 16 C 0.027 3.973 17 O -0.295 6.295 18 C -0.175 4.175 19 C 0.088 3.912 20 F -0.103 7.103 21 H 0.103 0.897 22 H 0.142 0.858 23 H 0.116 0.884 24 H 0.161 0.839 25 H 0.242 0.758 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.702 -8.842 0.179 10.016 hybrid contribution 0.614 -3.025 -0.182 3.092 sum 5.316 -11.867 -0.003 13.003 Atomic orbital electron populations 1.70536 1.06815 1.32824 1.41793 1.25653 0.96549 1.01851 0.92831 0.83576 0.74697 0.75310 0.76732 1.21478 1.21618 1.20990 1.21616 0.93445 0.89940 1.59916 0.93356 1.18407 0.87877 0.89790 0.90885 0.93193 1.59391 1.28439 1.42596 1.05221 1.21638 0.99093 0.97207 0.90185 1.20780 0.98449 0.95520 0.99682 1.18031 0.99270 0.97071 0.81104 1.91466 1.90639 1.83450 1.45940 1.17841 0.95086 0.93921 0.90486 1.84887 1.32633 1.16182 1.95780 1.21171 0.99347 0.98352 0.98648 1.17309 0.97729 0.93932 0.82223 1.91519 1.90093 1.83168 1.45517 0.89735 0.85765 0.88378 0.83878 0.75768 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.51 55.43 0.75 -25.41 15 2 C 0.04 1.16 5.39 -17.82 -0.10 1.07 15 3 Si 1.07 25.05 29.90 -169.99 -5.08 19.97 15 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.61 -16.64 8.71 -34.44 -0.30 -16.94 15 8 H 0.05 1.35 7.74 -52.49 -0.41 0.94 15 9 C 0.24 5.68 2.24 -70.02 -0.16 5.53 15 10 H 0.05 1.30 7.65 -51.93 -0.40 0.90 15 11 N -0.83 -17.87 7.38 -6.65 -0.05 -17.92 15 12 C -0.08 -1.57 4.99 -104.53 -0.52 -2.09 15 13 C -0.13 -2.23 9.24 -39.55 -0.37 -2.60 15 14 C 0.07 1.08 7.31 -39.30 -0.29 0.80 15 15 F -0.14 -2.22 17.11 2.25 0.04 -2.18 15 16 C 0.07 1.12 6.71 -39.18 -0.26 0.86 15 17 O -0.49 -6.38 13.37 -19.57 -0.26 -6.64 15 18 C -0.16 -2.46 9.96 -39.38 -0.39 -2.85 15 19 C 0.11 2.06 7.24 -39.44 -0.29 1.78 15 20 F -0.12 -2.55 16.56 2.25 0.04 -2.51 15 21 H 0.29 8.51 6.39 -40.82 -0.26 8.25 15 22 H 0.33 6.76 7.20 -39.30 -0.28 6.47 15 23 H 0.31 5.67 9.06 -39.29 -0.36 5.31 15 24 H 0.14 2.41 6.28 -52.49 -0.33 2.08 15 25 H 0.39 2.99 9.06 45.56 0.41 3.40 15 26 H 0.14 1.90 8.06 -52.49 -0.42 1.48 15 LS Contribution 242.38 15.07 3.65 3.65 Total: -1.00 -30.79 242.38 -4.42 -35.22 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -0.84 Total: 10.28 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.67 Total: -14.46 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.70 Total: -43.33 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.26 Total: -6.64 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.08 Total: -4.69 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.97 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.79 -4.42 -35.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095671636.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.997 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds