Wall clock time and date at job start Mon Mar 30 2020 03:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 11 11 N 1.46900 * 109.47041 * 59.72573 * 9 7 2 12 12 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 13 13 C 1.38256 * 119.92980 * 279.72384 * 12 9 7 14 14 C 1.38370 * 120.06838 * 179.72597 * 13 12 9 15 15 F 1.35101 * 120.03458 * 180.27752 * 14 13 12 16 16 C 1.38836 * 119.92802 * 0.54919 * 14 13 12 17 17 O 1.36019 * 120.06636 * 179.74589 * 16 14 13 18 18 C 1.38827 * 119.86502 * 359.72704 * 16 14 13 19 19 F 1.35102 * 120.03696 * 180.02562 * 18 16 14 20 20 C 1.38253 * 119.93277 * 100.00077 * 12 9 7 21 21 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 22 22 H 1.00906 * 110.99835 * 296.05213 * 11 9 7 23 23 H 1.00900 * 111.00100 * 59.99591 * 11 9 7 24 24 H 1.08002 * 119.96527 * 0.02562 * 13 12 9 25 25 H 0.96699 * 113.99786 * 269.97837 * 17 16 14 26 26 H 1.08005 * 119.96526 * 359.97438 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6283 -2.5592 0.8921 11 7 0.4010 -2.5739 -1.1963 12 6 2.2302 -3.6446 -0.0079 13 6 2.8269 -4.0343 -1.1926 14 6 3.7308 -5.0820 -1.2018 15 9 4.3177 -5.4586 -2.3589 16 6 4.0296 -5.7494 -0.0216 17 8 4.9137 -6.7830 -0.0282 18 6 3.4244 -5.3594 1.1654 19 9 3.7129 -6.0060 2.3160 20 6 2.5256 -4.3072 1.1689 21 1 -0.4851 0.8401 0.0004 22 1 -0.3063 -1.8543 -1.1827 23 1 0.9551 -2.5202 -2.0378 24 1 2.5910 -3.5174 -2.1111 25 1 4.5076 -7.6470 -0.1819 26 1 2.0548 -4.0031 2.0921 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095671657.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:55 Heat of formation + Delta-G solvation = -135.109717 kcal Electronic energy + Delta-G solvation = -15554.795788 eV Core-core repulsion = 12461.469506 eV Total energy + Delta-G solvation = -3093.326281 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.04128 -50.00415 -40.47853 -38.43344 -36.08682 -33.34166 -31.41694 -30.26117 -27.91672 -25.00663 -24.01686 -22.12933 -19.80350 -18.77628 -18.63592 -18.21804 -17.39830 -16.92129 -16.66434 -16.35423 -16.33333 -15.67478 -15.46264 -14.88051 -14.53862 -14.12146 -13.79819 -13.39253 -13.10642 -12.79053 -12.76205 -12.47793 -11.87987 -11.80279 -11.71221 -10.73905 -9.80139 -9.65719 -9.21021 -8.15578 -6.40751 -0.06918 -0.05331 1.37673 1.42730 1.52235 2.27287 2.42732 2.59588 3.03123 3.10977 3.36241 3.74290 3.79169 4.23100 4.56191 4.68932 4.72445 4.86980 4.99904 5.15522 5.62324 5.63382 5.73698 5.99925 6.58478 6.59507 6.87348 7.09012 7.36002 8.79621 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.033452 B = 0.007616 C = 0.007227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.823563 B = 3675.734946 C = 3873.505449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.029 3.971 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.563 4.563 8 H 0.050 0.950 9 C 0.242 3.758 10 H 0.030 0.970 11 N -0.842 5.842 12 C 0.006 3.994 13 C -0.137 4.137 14 C 0.099 3.901 15 F -0.129 7.129 16 C 0.023 3.977 17 O -0.486 6.486 18 C 0.101 3.899 19 F -0.129 7.129 20 C -0.152 4.152 21 H 0.269 0.731 22 H 0.350 0.650 23 H 0.320 0.680 24 H 0.146 0.854 25 H 0.410 0.590 26 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 -8.988 -0.961 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.172 4.172 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.602 4.602 8 H 0.069 0.931 9 C 0.132 3.868 10 H 0.048 0.952 11 N -0.371 5.371 12 C 0.005 3.995 13 C -0.156 4.156 14 C 0.079 3.921 15 F -0.108 7.108 16 C -0.024 4.024 17 O -0.298 6.298 18 C 0.081 3.919 19 F -0.108 7.108 20 C -0.172 4.172 21 H 0.079 0.921 22 H 0.165 0.835 23 H 0.131 0.869 24 H 0.164 0.836 25 H 0.268 0.732 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.748 -9.223 -0.581 10.389 hybrid contribution 0.465 1.422 -0.167 1.505 sum 5.213 -7.801 -0.748 9.412 Atomic orbital electron populations 1.69814 1.06785 1.28135 1.50272 1.25644 0.95686 1.02097 0.93801 0.85525 0.78814 0.79625 0.77755 1.19842 1.20353 1.20611 1.22006 0.93520 0.91982 1.52713 0.93144 1.17877 0.88910 0.88193 0.91803 0.95194 1.59512 1.18070 1.55640 1.03903 1.19989 0.94504 0.93754 0.91280 1.20980 0.97144 0.96996 1.00501 1.17671 0.96022 0.97457 0.80965 1.91481 1.82406 1.90627 1.46274 1.18053 0.97752 0.96078 0.90510 1.84868 1.32992 1.17732 1.94197 1.17601 0.97974 0.94834 0.81490 1.91483 1.92274 1.80198 1.46804 1.21119 0.99768 0.95821 1.00461 0.92121 0.83465 0.86916 0.83639 0.73153 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.47 11.52 21.45 0.25 -47.22 15 2 C 0.03 1.46 5.38 84.65 0.46 1.92 15 3 Si 0.96 40.95 29.54 68.60 2.03 42.98 15 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 15 6 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 7 C -0.56 -28.42 8.71 25.60 0.22 -28.20 15 8 H 0.05 2.59 7.74 -2.91 -0.02 2.57 15 9 C 0.24 11.20 2.95 43.42 0.13 11.33 15 10 H 0.03 1.53 8.00 -2.39 -0.02 1.51 15 11 N -0.84 -37.03 9.01 -174.95 -1.58 -38.61 15 12 C 0.01 0.23 4.90 -19.86 -0.10 0.13 15 13 C -0.14 -4.92 9.26 22.31 0.21 -4.71 15 14 C 0.10 3.26 7.31 22.44 0.16 3.42 15 15 F -0.13 -4.11 17.11 44.97 0.77 -3.34 15 16 C 0.02 0.72 6.72 22.55 0.15 0.87 15 17 O -0.49 -13.07 13.24 -93.76 -1.24 -14.31 15 18 C 0.10 3.31 7.31 22.44 0.16 3.47 15 19 F -0.13 -4.06 17.11 44.97 0.77 -3.29 15 20 C -0.15 -5.43 9.64 22.31 0.22 -5.22 15 21 H 0.27 13.37 8.31 -92.71 -0.77 12.60 15 22 H 0.35 16.72 7.06 -89.69 -0.63 16.08 15 23 H 0.32 13.17 7.33 -89.69 -0.66 12.51 15 24 H 0.15 5.06 6.65 -2.91 -0.02 5.04 15 25 H 0.41 6.61 9.06 -74.06 -0.67 5.94 15 26 H 0.15 5.01 8.03 -2.91 -0.02 4.99 15 Total: -1.00 -54.56 243.19 1.91 -52.65 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -0.70 Total: 28.13 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 1.61 Total: -16.99 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -1.33 Total: -85.83 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.24 Total: -14.31 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 1.54 Total: -6.63 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Total: -54.56 1.91 -52.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095671657.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.460 kcal (2) G-P(sol) polarization free energy of solvation -54.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds