Wall clock time and date at job start Mon Mar 30 2020 03:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47517 * 60.00191 * 9 7 2 11 11 N 1.46899 * 109.47148 * 299.99699 * 9 7 2 12 12 C 1.50701 * 109.46833 * 180.02562 * 9 7 2 13 13 C 1.38238 * 119.97767 * 259.99717 * 12 9 7 14 14 C 1.38447 * 119.99707 * 179.97438 * 13 12 9 15 15 F 1.35100 * 120.01155 * 179.97438 * 14 13 12 16 16 C 1.38460 * 119.96371 * 359.97438 * 14 13 12 17 17 C 1.38285 * 119.96269 * 0.02562 * 16 14 13 18 18 Cl 1.73596 * 120.00224 * 179.97438 * 17 16 14 19 19 C 1.38203 * 119.98616 * 79.72334 * 12 9 7 20 20 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 21 21 H 1.00903 * 111.00162 * 176.04804 * 11 9 7 22 22 H 1.00898 * 111.00359 * 299.99874 * 11 9 7 23 23 H 1.07996 * 119.99605 * 359.96256 * 13 12 9 24 24 H 1.08001 * 120.01371 * 179.97438 * 16 14 13 25 25 H 1.07998 * 119.97587 * 0.02562 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 1 0.6246 -2.5525 -0.9029 11 7 0.4059 -2.5829 1.1863 12 6 2.2301 -3.6446 -0.0171 13 6 2.5218 -4.2992 -1.1993 14 6 3.4218 -5.3512 -1.2041 15 9 3.7066 -5.9915 -2.3592 16 6 4.0296 -5.7467 -0.0247 17 6 3.7367 -5.0908 1.1570 18 17 4.4977 -5.5863 2.6365 19 6 2.8404 -4.0365 1.1593 20 1 -0.4850 0.8401 0.0040 21 1 -0.1581 -3.4195 1.1734 22 1 0.9636 -2.5357 2.0258 23 1 2.0474 -3.9900 -2.1189 24 1 4.7315 -6.5676 -0.0274 25 1 2.6149 -3.5218 2.0816 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095674310.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:06 Heat of formation + Delta-G solvation = -48.322959 kcal Electronic energy + Delta-G solvation = -13349.607525 eV Core-core repulsion = 10688.380975 eV Total energy + Delta-G solvation = -2661.226550 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.98387 -40.37304 -37.65918 -36.21668 -33.66559 -31.65221 -30.79767 -28.04846 -24.95948 -23.75923 -21.98054 -18.64768 -18.37884 -17.53294 -17.25275 -16.68692 -16.51107 -16.07786 -15.55956 -14.85585 -14.59060 -14.35878 -14.10918 -13.42764 -13.04387 -12.80266 -12.58795 -12.46235 -12.31295 -12.10864 -11.72470 -11.26682 -10.55236 -9.79129 -9.72179 -8.95377 -7.99755 -6.21446 0.00177 0.12130 0.96905 1.46175 1.46854 1.53815 2.39828 2.54657 3.17580 3.26867 3.73589 3.91397 4.03182 4.30310 4.42820 4.50726 4.89440 4.94074 5.09516 5.16733 5.63518 5.73034 5.76144 6.11650 6.62052 7.07575 7.23903 7.51424 9.03510 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.026842 B = 0.008124 C = 0.007249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.907684 B = 3445.697501 C = 3861.533918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.040 3.960 3 Si 0.945 3.055 4 H -0.285 1.285 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.048 0.952 9 C 0.260 3.740 10 H 0.023 0.977 11 N -0.819 5.819 12 C -0.050 4.050 13 C -0.158 4.158 14 C 0.108 3.892 15 F -0.137 7.137 16 C -0.159 4.159 17 C -0.005 4.005 18 Cl -0.052 7.052 19 C -0.122 4.122 20 H 0.257 0.743 21 H 0.315 0.685 22 H 0.326 0.674 23 H 0.136 0.864 24 H 0.165 0.835 25 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -10.535 2.000 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.211 1.211 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.067 0.933 9 C 0.150 3.850 10 H 0.041 0.959 11 N -0.346 5.346 12 C -0.053 4.053 13 C -0.178 4.178 14 C 0.088 3.912 15 F -0.116 7.116 16 C -0.179 4.179 17 C -0.032 4.032 18 Cl -0.023 7.023 19 C -0.141 4.141 20 H 0.066 0.934 21 H 0.126 0.874 22 H 0.139 0.861 23 H 0.154 0.846 24 H 0.182 0.818 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.486 -9.802 1.832 11.896 hybrid contribution 0.884 0.008 -0.011 0.884 sum 7.370 -9.794 1.821 12.392 Atomic orbital electron populations 1.70201 1.06947 1.26595 1.47412 1.25609 0.95373 1.01603 0.93833 0.85845 0.78535 0.79836 0.78663 1.21096 1.19809 1.19976 1.21063 0.92162 0.90769 1.54588 0.93347 1.17934 0.87524 0.88836 0.90740 0.95910 1.58979 1.28248 1.43315 1.04055 1.21317 0.96668 0.95481 0.91818 1.21266 1.00071 0.96400 1.00036 1.17459 0.98149 0.93748 0.81821 1.91487 1.92423 1.80535 1.47124 1.20967 1.03750 1.03582 0.89577 1.20559 0.97547 0.97104 0.87988 1.98359 1.80310 1.90598 1.32990 1.20952 0.97175 0.96558 0.99446 0.93426 0.87371 0.86075 0.84627 0.81782 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.62 12.77 21.45 0.27 -49.35 15 2 C 0.04 2.16 5.39 84.66 0.46 2.62 15 3 Si 0.95 42.56 29.54 68.60 2.03 44.59 15 4 H -0.29 -12.69 7.11 99.48 0.71 -11.98 15 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 15 7 C -0.55 -28.77 8.70 25.60 0.22 -28.54 15 8 H 0.05 2.55 7.74 -2.91 -0.02 2.53 15 9 C 0.26 12.16 2.85 43.42 0.12 12.29 15 10 H 0.02 1.20 8.00 -2.39 -0.02 1.18 15 11 N -0.82 -36.05 8.36 -174.96 -1.46 -37.52 15 12 C -0.05 -1.93 4.88 -19.87 -0.10 -2.02 15 13 C -0.16 -5.63 9.65 22.32 0.22 -5.41 15 14 C 0.11 3.36 7.30 22.37 0.16 3.52 15 15 F -0.14 -4.10 17.27 44.97 0.78 -3.33 15 16 C -0.16 -4.43 9.81 22.33 0.22 -4.21 15 17 C -0.01 -0.15 6.32 22.32 0.14 -0.01 15 18 Cl -0.05 -1.29 28.96 -2.72 -0.08 -1.37 15 19 C -0.12 -4.18 9.07 22.30 0.20 -3.98 15 20 H 0.26 13.98 8.31 -92.70 -0.77 13.21 15 21 H 0.31 12.25 9.06 -89.69 -0.81 11.43 15 22 H 0.33 13.49 7.34 -89.70 -0.66 12.83 15 23 H 0.14 4.76 8.04 -2.91 -0.02 4.74 15 24 H 0.16 3.61 8.06 -2.91 -0.02 3.59 15 25 H 0.14 4.58 6.67 -2.91 -0.02 4.56 15 Total: -1.00 -56.31 245.40 2.95 -53.36 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.23 Total: 19.36 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 1.65 Total: -25.75 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -1.19 Total: -86.86 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -56.31 2.95 -53.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095674310.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.039 kcal (2) G-P(sol) polarization free energy of solvation -56.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds