Wall clock time and date at job start Mon Mar 30 2020 03:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00169 * 2 1 4 4 H 1.48502 * 109.47269 * 270.00173 * 3 2 1 5 5 H 1.48500 * 109.46925 * 29.99871 * 3 2 1 6 6 H 1.48500 * 109.47072 * 149.99867 * 3 2 1 7 7 C 1.37871 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99877 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00045 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47362 * 60.00448 * 9 7 2 11 11 N 1.46897 * 109.47461 * 299.99917 * 9 7 2 12 12 C 1.50702 * 109.47259 * 180.02562 * 9 7 2 13 13 C 1.38204 * 120.00910 * 99.99963 * 12 9 7 14 14 C 1.38335 * 120.01671 * 180.02562 * 13 12 9 15 15 Cl 1.73598 * 119.98911 * 180.02562 * 14 13 12 16 16 C 1.38374 * 120.02147 * 359.97438 * 14 13 12 17 17 C 1.38172 * 120.01312 * 0.02562 * 16 14 13 18 18 C 1.38437 * 120.00579 * 280.29939 * 12 9 7 19 19 F 1.35108 * 120.01272 * 359.97438 * 18 12 9 20 20 H 0.97006 * 119.99866 * 0.02562 * 1 2 3 21 21 H 1.00891 * 111.00351 * 176.04530 * 11 9 7 22 22 H 1.00903 * 110.99701 * 300.00342 * 11 9 7 23 23 H 1.08000 * 119.99478 * 359.97438 * 13 12 9 24 24 H 1.07999 * 119.99239 * 180.02562 * 16 14 13 25 25 H 1.08002 * 120.00305 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4069 -2.5773 1.1992 12 6 2.2302 -3.6446 -0.0005 13 6 2.5214 -4.3050 1.1781 14 6 3.4207 -5.3562 1.1783 15 17 3.7854 -6.1857 2.6591 16 6 4.0288 -5.7474 -0.0015 17 6 3.7384 -5.0879 -1.1804 18 6 2.8430 -4.0316 -1.1800 19 9 2.5629 -3.3827 -2.3316 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1571 -3.4138 1.1907 22 1 0.9652 -2.5260 2.0381 23 1 2.0474 -3.9999 2.0993 24 1 4.7305 -6.5684 -0.0008 25 1 4.2135 -5.3931 -2.1011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095682213.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:33 Heat of formation + Delta-G solvation = -46.019280 kcal Electronic energy + Delta-G solvation = -13567.050811 eV Core-core repulsion = 10905.924157 eV Total energy + Delta-G solvation = -2661.126655 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.77000 -40.26866 -37.55076 -36.39509 -33.78877 -31.30978 -30.91213 -28.12055 -25.06401 -23.46592 -21.96574 -18.66294 -18.59679 -17.54734 -17.29046 -16.56986 -16.44316 -15.97388 -15.18323 -14.79004 -14.43548 -14.27879 -14.17723 -13.72518 -13.17307 -12.80980 -12.67034 -12.30055 -12.20517 -12.06810 -11.62572 -11.37636 -10.59630 -9.93983 -9.42464 -9.02900 -8.02158 -6.24419 0.01558 0.21415 1.08671 1.42049 1.42851 1.52360 2.40205 2.54663 3.21464 3.37636 3.74370 3.86468 4.14755 4.28402 4.41033 4.67018 4.89016 5.06689 5.09059 5.17367 5.45202 5.69893 5.78642 6.09264 6.57636 7.01868 7.18730 7.47879 9.01413 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.008473 C = 0.007660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.988367 B = 3303.914382 C = 3654.579495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.037 3.963 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.044 0.956 9 C 0.263 3.737 10 H 0.014 0.986 11 N -0.818 5.818 12 C -0.122 4.122 13 C -0.100 4.100 14 C -0.044 4.044 15 Cl -0.059 7.059 16 C -0.092 4.092 17 C -0.133 4.133 18 C 0.077 3.923 19 F -0.147 7.147 20 H 0.257 0.743 21 H 0.315 0.685 22 H 0.327 0.673 23 H 0.138 0.862 24 H 0.174 0.826 25 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 -12.111 1.752 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.167 4.167 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.062 0.938 9 C 0.153 3.847 10 H 0.032 0.968 11 N -0.346 5.346 12 C -0.126 4.126 13 C -0.119 4.119 14 C -0.071 4.071 15 Cl -0.030 7.030 16 C -0.110 4.110 17 C -0.152 4.152 18 C 0.057 3.943 19 F -0.126 7.126 20 H 0.066 0.934 21 H 0.127 0.873 22 H 0.141 0.859 23 H 0.155 0.845 24 H 0.191 0.809 25 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.300 -11.361 1.593 13.598 hybrid contribution 0.585 0.344 0.033 0.680 sum 7.886 -11.018 1.626 13.646 Atomic orbital electron populations 1.70218 1.06999 1.26566 1.47523 1.25653 0.95471 1.01797 0.93764 0.85727 0.78814 0.79894 0.78105 1.20336 1.20659 1.19499 1.20999 0.91861 0.90841 1.54504 0.93820 1.17734 0.87542 0.89102 0.90327 0.96849 1.58879 1.28303 1.43422 1.04003 1.21578 1.00141 0.98477 0.92404 1.20767 0.98299 0.94912 0.97879 1.20966 1.00460 0.96847 0.88778 1.98350 1.93750 1.77225 1.33646 1.21105 1.00001 1.00873 0.89053 1.21354 0.98047 0.94814 1.00987 1.18047 0.99726 0.94703 0.81805 1.91455 1.92614 1.80906 1.47597 0.93388 0.87276 0.85916 0.84465 0.80877 0.81299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.70 12.77 21.45 0.27 -51.43 15 2 C 0.04 2.09 5.39 84.65 0.46 2.55 15 3 Si 0.95 44.23 29.54 68.60 2.03 46.26 15 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 15 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 15 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 7 C -0.54 -30.27 8.70 25.60 0.22 -30.05 15 8 H 0.04 2.45 7.74 -2.91 -0.02 2.43 15 9 C 0.26 13.24 2.56 43.42 0.11 13.35 15 10 H 0.01 0.79 7.96 -2.39 -0.02 0.77 15 11 N -0.82 -37.85 8.02 -174.95 -1.40 -39.25 15 12 C -0.12 -5.05 5.02 -19.82 -0.10 -5.15 15 13 C -0.10 -3.44 9.03 22.28 0.20 -3.24 15 14 C -0.04 -1.24 6.32 22.33 0.14 -1.10 15 15 Cl -0.06 -1.41 28.95 -2.72 -0.08 -1.49 15 16 C -0.09 -2.26 9.83 22.29 0.22 -2.04 15 17 C -0.13 -3.73 10.03 22.31 0.22 -3.51 15 18 C 0.08 2.95 7.23 22.37 0.16 3.11 15 19 F -0.15 -6.32 16.67 44.97 0.75 -5.57 15 20 H 0.26 14.44 8.31 -92.70 -0.77 13.67 15 21 H 0.32 12.86 9.06 -89.70 -0.81 12.05 15 22 H 0.33 14.14 7.28 -89.69 -0.65 13.49 15 23 H 0.14 4.58 6.25 -2.91 -0.02 4.56 15 24 H 0.17 2.90 8.06 -2.91 -0.02 2.88 15 25 H 0.17 3.55 8.06 -2.91 -0.02 3.53 15 Total: -1.00 -62.83 244.08 2.98 -59.85 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.22 Total: 17.70 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 1.64 Total: -26.07 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -1.13 Total: -90.68 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.75 Total: -5.57 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -62.83 2.98 -59.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095682213.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.827 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds