Wall clock time and date at job start Mon Mar 30 2020 03:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00641 * 2 1 4 4 H 1.48496 * 109.47336 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46965 * 300.00570 * 3 2 1 6 6 H 1.48499 * 109.47001 * 60.00030 * 3 2 1 7 7 C 1.37875 * 119.99330 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99552 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00578 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46924 * 60.00022 * 9 7 2 11 11 N 1.46901 * 109.46758 * 300.00333 * 9 7 2 12 12 C 1.50697 * 109.47328 * 180.02562 * 9 7 2 13 13 C 1.38245 * 120.00335 * 100.00075 * 12 9 7 14 14 C 1.38220 * 120.04509 * 179.97438 * 13 12 9 15 15 C 1.38262 * 120.06364 * 0.02562 * 14 13 12 16 16 C 1.38279 * 120.01128 * 359.97438 * 15 14 13 17 17 Cl 1.73594 * 120.02329 * 180.02562 * 16 15 14 18 18 C 1.38394 * 120.00772 * 279.97730 * 12 9 7 19 19 F 1.35106 * 120.03230 * 0.02562 * 18 12 9 20 20 H 0.97003 * 119.99606 * 359.97438 * 1 2 3 21 21 H 1.00894 * 111.00606 * 299.99669 * 11 9 7 22 22 H 1.00900 * 111.00003 * 63.95283 * 11 9 7 23 23 H 1.07993 * 119.97777 * 359.70330 * 13 12 9 24 24 H 1.08004 * 119.97032 * 179.97438 * 14 13 12 25 25 H 1.08000 * 119.99182 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6239 -2.5567 -0.8903 11 7 0.4067 -2.5772 1.1992 12 6 2.2301 -3.6447 -0.0005 13 6 2.5212 -4.3052 1.1785 14 6 3.4188 -5.3563 1.1794 15 6 4.0274 -5.7485 0.0014 16 6 3.7379 -5.0895 -1.1793 17 17 4.5013 -5.5821 -2.6585 18 6 2.8376 -4.0359 -1.1808 19 9 2.5538 -3.3909 -2.3336 20 1 -0.4850 0.8401 0.0004 21 1 0.9649 -2.5260 2.0381 22 1 -0.3006 -1.8576 1.1911 23 1 2.0504 -3.9970 2.1002 24 1 3.6457 -5.8713 2.1012 25 1 4.7289 -6.5697 0.0035 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095684350.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:07 Heat of formation + Delta-G solvation = -34.285492 kcal Electronic energy + Delta-G solvation = -13636.056596 eV Core-core repulsion = 10975.438756 eV Total energy + Delta-G solvation = -2660.617840 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.16931 -38.71063 -36.31748 -34.74248 -31.74463 -29.93959 -29.31121 -26.12789 -23.39761 -22.08523 -20.26378 -17.23877 -16.67457 -16.10822 -15.64367 -14.96701 -14.69523 -14.23442 -13.83808 -12.92781 -12.68064 -12.52487 -12.36399 -12.12000 -11.44470 -11.12196 -10.96728 -10.90496 -10.75077 -10.60224 -10.07313 -9.75960 -8.77500 -8.25729 -8.11729 -7.34216 -6.17625 -4.33713 1.48998 1.66800 2.35398 3.18479 3.27479 3.32455 3.99792 4.30159 4.67736 5.05254 5.18672 5.41280 5.56512 5.72498 6.06776 6.25683 6.44007 6.53584 6.79727 6.86447 7.23260 7.51575 7.66904 7.94529 8.54362 8.80059 8.97726 9.37852 10.81463 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.032719 B = 0.008824 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.567397 B = 3172.273901 C = 3584.628802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.242 3.758 10 H 0.056 0.944 11 N -0.849 5.849 12 C -0.052 4.052 13 C -0.082 4.082 14 C -0.126 4.126 15 C -0.113 4.113 16 C -0.077 4.077 17 Cl -0.073 7.073 18 C 0.107 3.893 19 F -0.123 7.123 20 H 0.267 0.733 21 H 0.312 0.688 22 H 0.359 0.641 23 H 0.138 0.862 24 H 0.129 0.871 25 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.935 -8.801 1.243 10.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.132 3.868 10 H 0.074 0.926 11 N -0.380 5.380 12 C -0.054 4.054 13 C -0.101 4.101 14 C -0.144 4.144 15 C -0.132 4.132 16 C -0.104 4.104 17 Cl -0.044 7.044 18 C 0.086 3.914 19 F -0.101 7.101 20 H 0.077 0.923 21 H 0.122 0.878 22 H 0.176 0.824 23 H 0.156 0.844 24 H 0.146 0.854 25 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.601 -9.414 0.773 10.982 hybrid contribution 0.922 1.998 -0.241 2.213 sum 6.522 -7.416 0.532 9.891 Atomic orbital electron populations 1.69742 1.05867 1.27324 1.50119 1.24995 0.94977 0.99407 0.94065 0.86410 0.80164 0.82980 0.77758 1.19666 1.20697 1.20835 1.21738 0.93626 0.90645 1.52344 0.92500 1.17920 0.88952 0.87608 0.92345 0.92631 1.59553 1.18359 1.56291 1.03774 1.20650 0.97142 0.97131 0.90448 1.21032 0.96260 0.94346 0.98432 1.21083 0.97790 0.98211 0.97327 1.20697 1.01468 1.00476 0.90510 1.20927 1.00923 0.99726 0.88851 1.98334 1.80589 1.90865 1.34622 1.17302 0.98096 0.92774 0.83180 1.91515 1.92031 1.80087 1.46505 0.92346 0.87790 0.82361 0.84392 0.85353 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.24 11.54 55.43 0.64 -23.60 15 2 C 0.07 1.83 5.38 -17.82 -0.10 1.73 15 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.54 -14.53 8.70 -34.44 -0.30 -14.83 15 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 15 9 C 0.24 5.96 2.67 -70.02 -0.19 5.77 15 10 H 0.06 1.55 7.95 -51.93 -0.41 1.13 15 11 N -0.85 -19.31 8.67 -6.65 -0.06 -19.37 15 12 C -0.05 -1.11 5.03 -104.56 -0.53 -1.64 15 13 C -0.08 -1.46 9.25 -39.59 -0.37 -1.83 15 14 C -0.13 -1.85 10.04 -39.58 -0.40 -2.25 15 15 C -0.11 -1.69 9.83 -39.56 -0.39 -2.07 15 16 C -0.08 -1.35 6.33 -39.44 -0.25 -1.60 15 17 Cl -0.07 -1.16 28.62 -51.86 -1.48 -2.64 15 18 C 0.11 2.23 7.21 -39.39 -0.28 1.95 15 19 F -0.12 -2.78 16.24 2.25 0.04 -2.74 15 20 H 0.27 6.90 8.31 -40.82 -0.34 6.56 15 21 H 0.31 6.55 7.28 -39.30 -0.29 6.27 15 22 H 0.36 8.83 7.08 -39.29 -0.28 8.55 15 23 H 0.14 2.29 6.24 -52.49 -0.33 1.97 15 24 H 0.13 1.43 8.06 -52.48 -0.42 1.01 15 25 H 0.13 1.56 8.06 -52.49 -0.42 1.14 15 LS Contribution 241.07 15.07 3.63 3.63 Total: -1.00 -27.23 241.07 -6.74 -33.97 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -1.69 Total: 9.65 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -2.79 Total: -14.77 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.58 Total: -42.97 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.48 Total: -2.64 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.23 -6.74 -33.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095684350.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.315 kcal (2) G-P(sol) polarization free energy of solvation -27.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds