Wall clock time and date at job start Mon Mar 30 2020 03:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99481 * 2 1 4 4 H 1.48494 * 109.47070 * 269.99576 * 3 2 1 5 5 H 1.48498 * 109.47550 * 30.00150 * 3 2 1 6 6 H 1.48503 * 109.46895 * 149.99922 * 3 2 1 7 7 C 1.37872 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99995 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47078 * 60.00260 * 9 7 2 11 11 N 1.46897 * 109.47170 * 300.00328 * 9 7 2 12 12 C 1.50699 * 109.47023 * 179.97438 * 9 7 2 13 13 C 1.38255 * 119.94574 * 100.00295 * 12 9 7 14 14 C 1.38173 * 120.10981 * 180.02562 * 13 12 9 15 15 C 1.38695 * 120.01801 * 0.02562 * 14 13 12 16 16 O 1.35956 * 120.05299 * 180.02562 * 15 14 13 17 17 C 1.38836 * 119.89779 * 359.97438 * 15 14 13 18 18 F 1.35103 * 120.05612 * 180.02562 * 17 15 14 19 19 C 1.38451 * 119.95531 * 280.02372 * 12 9 7 20 20 F 1.35101 * 120.00244 * 359.95936 * 19 12 9 21 21 H 0.96996 * 120.00215 * 359.97438 * 1 2 3 22 22 H 1.00894 * 111.00098 * 299.99672 * 11 9 7 23 23 H 1.00901 * 111.00575 * 63.95576 * 11 9 7 24 24 H 1.07995 * 119.94679 * 359.74794 * 13 12 9 25 25 H 1.08005 * 119.99255 * 179.97438 * 14 13 12 26 26 H 0.96692 * 113.99961 * 269.97142 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5773 1.1991 12 6 2.2305 -3.6445 -0.0018 13 6 2.5217 -4.3048 1.1774 14 6 3.4195 -5.3551 1.1803 15 6 4.0309 -5.7485 -0.0009 16 8 4.9140 -6.7822 0.0010 17 6 3.7388 -5.0858 -1.1854 18 9 4.3320 -5.4667 -2.3379 19 6 2.8375 -4.0338 -1.1837 20 9 2.5512 -3.3874 -2.3350 21 1 -0.4850 0.8400 0.0004 22 1 0.9652 -2.5260 2.0380 23 1 -0.3005 -1.8578 1.1911 24 1 2.0501 -3.9963 2.0987 25 1 3.6460 -5.8693 2.1027 26 1 5.8307 -6.5160 0.1550 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095685669.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:04 Heat of formation + Delta-G solvation = -111.520621 kcal Electronic energy + Delta-G solvation = -15774.440471 eV Core-core repulsion = 12682.137089 eV Total energy + Delta-G solvation = -3092.303381 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.91682 -47.93950 -39.19623 -36.88416 -34.38546 -31.52863 -29.96393 -28.67233 -26.06705 -23.36264 -22.43270 -20.50406 -18.57207 -17.11534 -16.79883 -16.54937 -16.27623 -15.59463 -14.96167 -14.57750 -14.42525 -14.22521 -13.80423 -13.05043 -12.97451 -12.65720 -12.38279 -11.65967 -11.23839 -11.06178 -10.91203 -10.84766 -10.59481 -10.12824 -9.85622 -8.78656 -8.32309 -8.09819 -7.37827 -6.20898 -4.37604 1.35451 1.40712 3.17943 3.25202 3.27861 3.73244 4.01421 4.25932 4.48420 4.94450 4.99988 5.13107 5.34533 5.58320 5.93902 6.20831 6.25810 6.41643 6.70563 6.75476 7.08208 7.44492 7.62911 7.67848 7.89744 8.50188 8.75788 8.94151 9.34134 10.78148 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.035600 B = 0.008394 C = 0.007775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.321974 B = 3334.864242 C = 3600.398576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.241 3.759 10 H 0.058 0.942 11 N -0.849 5.849 12 C -0.042 4.042 13 C -0.081 4.081 14 C -0.130 4.130 15 C 0.068 3.932 16 O -0.488 6.488 17 C 0.032 3.968 18 F -0.133 7.133 19 C 0.080 3.920 20 F -0.121 7.121 21 H 0.268 0.732 22 H 0.313 0.687 23 H 0.360 0.640 24 H 0.145 0.855 25 H 0.137 0.863 26 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.548 -7.316 2.756 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.075 0.925 9 C 0.131 3.869 10 H 0.076 0.924 11 N -0.380 5.380 12 C -0.043 4.043 13 C -0.099 4.099 14 C -0.149 4.149 15 C 0.022 3.978 16 O -0.297 6.297 17 C 0.011 3.989 18 F -0.111 7.111 19 C 0.059 3.941 20 F -0.099 7.099 21 H 0.078 0.922 22 H 0.123 0.877 23 H 0.177 0.823 24 H 0.163 0.837 25 H 0.154 0.846 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.663 -8.245 2.272 10.258 hybrid contribution 1.412 2.224 -0.283 2.650 sum 7.075 -6.021 1.990 9.501 Atomic orbital electron populations 1.69726 1.05875 1.27521 1.49812 1.24994 0.94987 0.99421 0.93980 0.86447 0.79742 0.82576 0.78428 1.20363 1.21003 1.19802 1.21680 0.93588 0.90581 1.52769 0.92502 1.17933 0.88937 0.87479 0.92516 0.92431 1.59549 1.18327 1.56362 1.03716 1.20650 0.96599 0.96953 0.90139 1.20878 0.96281 0.94022 0.98724 1.21305 0.98774 0.97922 0.96861 1.17995 0.97440 0.91389 0.90951 1.84866 1.20059 1.30295 1.94477 1.18056 0.99751 0.98056 0.83018 1.91455 1.82267 1.90516 1.46898 1.17399 0.99367 0.93551 0.83790 1.91519 1.92017 1.79900 1.46462 0.92223 0.87736 0.82261 0.83706 0.84559 0.75870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.85 11.54 55.43 0.64 -23.21 15 2 C 0.07 1.82 5.38 -17.82 -0.10 1.72 15 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.55 -14.29 8.70 -34.44 -0.30 -14.59 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.24 5.83 2.66 -70.02 -0.19 5.64 15 10 H 0.06 1.57 7.94 -51.93 -0.41 1.16 15 11 N -0.85 -18.86 8.67 -6.65 -0.06 -18.92 15 12 C -0.04 -0.87 5.03 -104.54 -0.53 -1.40 15 13 C -0.08 -1.40 9.25 -39.60 -0.37 -1.76 15 14 C -0.13 -1.94 9.98 -39.44 -0.39 -2.34 15 15 C 0.07 1.09 6.71 -39.19 -0.26 0.83 15 16 O -0.49 -6.67 13.37 -19.60 -0.26 -6.94 15 17 C 0.03 0.60 7.32 -39.25 -0.29 0.31 15 18 F -0.13 -2.49 17.03 2.25 0.04 -2.45 15 19 C 0.08 1.67 7.24 -39.39 -0.29 1.39 15 20 F -0.12 -2.74 16.57 2.25 0.04 -2.70 15 21 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 22 H 0.31 6.36 7.28 -39.30 -0.29 6.07 15 23 H 0.36 8.68 7.08 -39.29 -0.28 8.40 15 24 H 0.15 2.30 6.24 -52.49 -0.33 1.98 15 25 H 0.14 1.60 8.06 -52.48 -0.42 1.17 15 26 H 0.39 3.32 9.06 45.56 0.41 3.73 15 LS Contribution 242.00 15.07 3.65 3.65 Total: -1.00 -28.36 242.00 -4.54 -32.90 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -0.85 Total: 12.37 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.70 Total: -10.20 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.58 Total: -42.12 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.26 Total: -6.94 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.08 Total: -5.15 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.36 -4.54 -32.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095685669.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.622 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds