Wall clock time and date at job start Mon Mar 30 2020 03:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99481 * 2 1 4 4 H 1.48494 * 109.47070 * 269.99576 * 3 2 1 5 5 H 1.48498 * 109.47550 * 30.00150 * 3 2 1 6 6 H 1.48503 * 109.46895 * 149.99922 * 3 2 1 7 7 C 1.37872 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99995 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47078 * 60.00260 * 9 7 2 11 11 N 1.46897 * 109.47170 * 300.00328 * 9 7 2 12 12 C 1.50699 * 109.47023 * 179.97438 * 9 7 2 13 13 C 1.38255 * 119.94574 * 100.00295 * 12 9 7 14 14 C 1.38173 * 120.10981 * 180.02562 * 13 12 9 15 15 C 1.38695 * 120.01801 * 0.02562 * 14 13 12 16 16 O 1.35956 * 120.05299 * 180.02562 * 15 14 13 17 17 C 1.38836 * 119.89779 * 359.97438 * 15 14 13 18 18 F 1.35103 * 120.05612 * 180.02562 * 17 15 14 19 19 C 1.38451 * 119.95531 * 280.02372 * 12 9 7 20 20 F 1.35101 * 120.00244 * 359.95936 * 19 12 9 21 21 H 0.96996 * 120.00215 * 359.97438 * 1 2 3 22 22 H 1.00894 * 111.00098 * 299.99672 * 11 9 7 23 23 H 1.00901 * 111.00575 * 63.95576 * 11 9 7 24 24 H 1.07995 * 119.94679 * 359.74794 * 13 12 9 25 25 H 1.08005 * 119.99255 * 179.97438 * 14 13 12 26 26 H 0.96692 * 113.99961 * 269.97142 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4070 -2.5773 1.1991 12 6 2.2305 -3.6445 -0.0018 13 6 2.5217 -4.3048 1.1774 14 6 3.4195 -5.3551 1.1803 15 6 4.0309 -5.7485 -0.0009 16 8 4.9140 -6.7822 0.0010 17 6 3.7388 -5.0858 -1.1854 18 9 4.3320 -5.4667 -2.3379 19 6 2.8375 -4.0338 -1.1837 20 9 2.5512 -3.3874 -2.3350 21 1 -0.4850 0.8400 0.0004 22 1 0.9652 -2.5260 2.0380 23 1 -0.3005 -1.8578 1.1911 24 1 2.0501 -3.9963 2.0987 25 1 3.6460 -5.8693 2.1027 26 1 5.8307 -6.5160 0.1550 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095685669.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:04 Heat of formation + Delta-G solvation = -132.774288 kcal Electronic energy + Delta-G solvation = -15775.362099 eV Core-core repulsion = 12682.137089 eV Total energy + Delta-G solvation = -3093.225010 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.44128 -49.52096 -40.54362 -38.24895 -36.10903 -33.40824 -31.36919 -30.20110 -27.96188 -24.99924 -23.84717 -22.13871 -19.84880 -18.73260 -18.60031 -18.05864 -17.76031 -17.17554 -16.62273 -16.15793 -16.03710 -15.64298 -15.32121 -14.82914 -14.42582 -14.34345 -13.91962 -13.39112 -12.96758 -12.74677 -12.60140 -12.53407 -11.96077 -11.87230 -11.61866 -10.76848 -9.75211 -9.59073 -9.24055 -8.17459 -6.43111 -0.05424 0.02130 1.36526 1.39285 1.48233 2.29213 2.43468 2.64506 3.00845 3.21808 3.49941 3.70960 3.94142 4.19845 4.45525 4.73873 4.82227 4.99567 5.13893 5.27961 5.59069 5.59826 5.73729 5.94617 6.57339 6.70281 6.82639 7.08434 7.33382 8.78224 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.035600 B = 0.008394 C = 0.007775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.321974 B = 3334.864242 C = 3600.398576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.561 4.561 8 H 0.048 0.952 9 C 0.247 3.753 10 H 0.010 0.990 11 N -0.836 5.836 12 C -0.071 4.071 13 C -0.074 4.074 14 C -0.106 4.106 15 C 0.092 3.908 16 O -0.487 6.487 17 C 0.019 3.981 18 F -0.137 7.137 19 C 0.050 3.950 20 F -0.144 7.144 21 H 0.270 0.730 22 H 0.326 0.674 23 H 0.349 0.651 24 H 0.161 0.839 25 H 0.184 0.816 26 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.115 -8.364 4.555 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.600 4.600 8 H 0.066 0.934 9 C 0.136 3.864 10 H 0.028 0.972 11 N -0.366 5.366 12 C -0.072 4.072 13 C -0.092 4.092 14 C -0.124 4.124 15 C 0.046 3.954 16 O -0.300 6.300 17 C -0.002 4.002 18 F -0.116 7.116 19 C 0.029 3.971 20 F -0.123 7.123 21 H 0.079 0.921 22 H 0.137 0.863 23 H 0.165 0.835 24 H 0.178 0.822 25 H 0.201 0.799 26 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 7.265 -9.309 4.085 12.495 hybrid contribution 0.992 2.419 -0.825 2.741 sum 8.257 -6.890 3.260 11.237 Atomic orbital electron populations 1.69823 1.06900 1.28237 1.50224 1.25710 0.95774 1.02329 0.93712 0.85530 0.78834 0.79071 0.78050 1.20854 1.20124 1.19203 1.21910 0.93276 0.92018 1.52829 0.93413 1.17609 0.88921 0.88536 0.91317 0.97167 1.59477 1.17876 1.55551 1.03732 1.20443 0.97505 0.97483 0.91801 1.21077 0.96319 0.94104 0.97688 1.21675 0.96371 0.96327 0.98073 1.18058 0.97020 0.90274 0.90023 1.84809 1.21653 1.29203 1.94347 1.18244 0.99807 0.98151 0.83971 1.91437 1.82248 1.90477 1.47440 1.17725 1.01095 0.94972 0.83274 1.91444 1.92476 1.80656 1.47686 0.92090 0.86318 0.83536 0.82193 0.79880 0.72623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.73 11.54 21.45 0.25 -49.48 15 2 C 0.03 1.36 5.38 84.65 0.46 1.81 15 3 Si 0.96 42.26 29.54 68.60 2.03 44.29 15 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 15 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 15 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 7 C -0.56 -29.93 8.70 25.60 0.22 -29.71 15 8 H 0.05 2.57 7.74 -2.91 -0.02 2.55 15 9 C 0.25 12.27 2.66 43.43 0.12 12.39 15 10 H 0.01 0.61 7.94 -2.39 -0.02 0.59 15 11 N -0.84 -37.42 8.67 -174.95 -1.52 -38.94 15 12 C -0.07 -2.97 5.03 -19.81 -0.10 -3.07 15 13 C -0.07 -2.37 9.25 22.26 0.21 -2.16 15 14 C -0.11 -2.70 9.98 22.36 0.22 -2.48 15 15 C 0.09 2.64 6.71 22.52 0.15 2.79 15 16 O -0.49 -11.08 13.37 -93.05 -1.24 -12.32 15 17 C 0.02 0.69 7.32 22.48 0.16 0.85 15 18 F -0.14 -5.06 17.03 44.97 0.77 -4.29 15 19 C 0.05 2.13 7.24 22.39 0.16 2.29 15 20 F -0.14 -6.90 16.57 44.97 0.75 -6.15 15 21 H 0.27 13.95 8.31 -92.71 -0.77 13.18 15 22 H 0.33 12.97 7.28 -89.70 -0.65 12.32 15 23 H 0.35 17.11 7.08 -89.69 -0.63 16.48 15 24 H 0.16 4.61 6.24 -2.91 -0.02 4.59 15 25 H 0.18 3.04 8.06 -2.91 -0.02 3.02 15 26 H 0.41 5.01 9.06 -74.06 -0.67 4.34 15 Total: -1.00 -62.67 242.00 1.93 -60.74 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -0.69 Total: 23.45 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 1.60 Total: -17.29 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -1.27 Total: -88.42 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -1.24 Total: -12.32 kcal Atomic # 9 Polarization: -11.96 SS G_CDS: 1.51 Total: -10.45 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -62.67 1.93 -60.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095685669.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.037 kcal (2) G-P(sol) polarization free energy of solvation -62.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds