Wall clock time and date at job start Mon Mar 30 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 N 1.46900 * 109.46946 * 299.99661 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.38207 * 119.98988 * 99.72057 * 12 9 7 14 14 C 1.38373 * 120.05393 * 179.76946 * 13 12 9 15 15 F 1.35099 * 119.98269 * 180.23636 * 14 13 12 16 16 C 1.38692 * 120.03680 * 0.51038 * 14 13 12 17 17 F 1.35100 * 120.00654 * 179.72566 * 16 14 13 18 18 C 1.38320 * 119.98788 * 359.74452 * 16 14 13 19 19 C 1.38680 * 119.99508 * 280.00079 * 12 9 7 20 20 O 1.35940 * 120.01981 * 359.97438 * 19 12 9 21 21 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 22 22 H 1.00907 * 110.99867 * 176.04554 * 11 9 7 23 23 H 1.00896 * 111.00376 * 299.99893 * 11 9 7 24 24 H 1.08001 * 119.97494 * 0.02562 * 13 12 9 25 25 H 1.07996 * 120.03159 * 179.97438 * 18 16 14 26 26 H 0.96704 * 114.00192 * 90.00491 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2304 -3.6445 0.0005 13 6 2.5258 -4.3010 1.1804 14 6 3.4212 -5.3559 1.1811 15 9 3.7052 -5.9996 2.3344 16 6 4.0316 -5.7492 -0.0005 17 9 4.9099 -6.7757 0.0018 18 6 3.7412 -5.0900 -1.1814 19 6 2.8395 -4.0359 -1.1823 20 8 2.5530 -3.3870 -2.3419 21 1 -0.4850 -0.8401 -0.0004 22 1 -0.1578 -3.4134 1.1912 23 1 0.9638 -2.5251 2.0390 24 1 2.0542 -3.9929 2.1019 25 1 4.2164 -5.3954 -2.1018 26 1 3.1312 -2.6336 -2.5243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095685794.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:12 Heat of formation + Delta-G solvation = -131.328697 kcal Electronic energy + Delta-G solvation = -15745.206404 eV Core-core repulsion = 12652.044080 eV Total energy + Delta-G solvation = -3093.162324 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.58549 -49.66276 -40.95803 -37.59144 -36.59851 -33.56334 -31.14412 -30.37028 -27.65096 -25.02105 -23.85900 -22.35765 -19.81246 -19.01433 -18.54147 -18.48768 -17.46136 -17.22774 -16.56103 -16.11905 -16.05265 -15.59770 -15.48068 -15.21481 -14.91891 -14.62699 -13.82403 -13.63474 -12.72796 -12.66970 -12.56502 -12.32307 -11.90498 -11.70902 -10.88087 -10.46684 -10.06999 -9.48765 -9.37681 -8.35703 -6.23975 -0.23118 -0.11582 1.61562 1.67660 1.86039 2.14601 2.63092 2.67546 3.03804 3.31308 3.37696 3.54800 3.78660 4.00320 4.21293 4.51607 4.65753 4.69045 4.82915 5.05705 5.34663 5.56130 5.89698 6.21577 6.63915 6.74564 6.77910 6.99484 7.68295 9.01088 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.034830 B = 0.008165 C = 0.007654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.719039 B = 3428.647729 C = 3657.443982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 1.108 2.892 4 H -0.292 1.292 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.613 4.613 8 H 0.044 0.956 9 C 0.249 3.751 10 H 0.022 0.978 11 N -0.840 5.840 12 C -0.095 4.095 13 C -0.123 4.123 14 C 0.054 3.946 15 F -0.134 7.134 16 C 0.062 3.938 17 F -0.131 7.131 18 C -0.142 4.142 19 C 0.129 3.871 20 O -0.493 6.493 21 H 0.279 0.721 22 H 0.320 0.680 23 H 0.332 0.668 24 H 0.149 0.851 25 H 0.175 0.825 26 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -8.479 -0.921 11.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.210 4.210 3 Si 0.932 3.068 4 H -0.218 1.218 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.651 4.651 8 H 0.062 0.938 9 C 0.139 3.861 10 H 0.040 0.960 11 N -0.370 5.370 12 C -0.098 4.098 13 C -0.142 4.142 14 C 0.034 3.966 15 F -0.113 7.113 16 C 0.041 3.959 17 F -0.110 7.110 18 C -0.161 4.161 19 C 0.083 3.917 20 O -0.306 6.306 21 H 0.091 0.909 22 H 0.133 0.867 23 H 0.147 0.853 24 H 0.167 0.833 25 H 0.192 0.808 26 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 6.822 -6.651 -1.198 9.603 hybrid contribution 1.063 -2.508 0.571 2.783 sum 7.885 -9.158 -0.626 12.102 Atomic orbital electron populations 1.70670 1.07944 1.32268 1.44431 1.26869 0.96565 1.05264 0.92301 0.83042 0.74085 0.72135 0.77524 1.21825 1.20500 1.19433 1.21849 0.93224 0.91378 1.58678 0.93761 1.17966 0.88084 0.90113 0.89894 0.95991 1.59172 1.28811 1.43880 1.05093 1.21656 0.99169 0.96963 0.92022 1.20790 0.98677 0.94829 0.99875 1.17623 1.01284 0.96446 0.81259 1.91485 1.92591 1.80363 1.46873 1.17307 0.94612 0.90467 0.93469 1.91500 1.66253 1.56019 1.97186 1.21388 0.99349 0.97335 0.98028 1.18048 0.94491 0.93418 0.85775 1.84673 1.61170 1.48444 1.36340 0.90932 0.86733 0.85314 0.83325 0.80783 0.72982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 13.50 21.45 0.29 -53.12 15 2 C -0.01 -0.29 5.39 84.65 0.46 0.16 15 3 Si 1.11 47.35 29.90 68.60 2.05 49.40 15 4 H -0.29 -12.88 7.11 99.48 0.71 -12.17 15 5 H -0.28 -11.35 7.11 99.48 0.71 -10.65 15 6 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 7 C -0.61 -31.05 8.70 25.60 0.22 -30.83 15 8 H 0.04 2.21 7.74 -2.91 -0.02 2.19 15 9 C 0.25 11.38 2.12 43.42 0.09 11.47 15 10 H 0.02 1.16 7.71 -2.39 -0.02 1.14 15 11 N -0.84 -35.96 7.28 -174.95 -1.27 -37.24 15 12 C -0.09 -3.61 5.03 -19.77 -0.10 -3.71 15 13 C -0.12 -4.19 9.22 22.29 0.21 -3.98 15 14 C 0.05 1.74 7.30 22.41 0.16 1.90 15 15 F -0.13 -4.29 17.18 44.97 0.77 -3.52 15 16 C 0.06 1.87 7.30 22.40 0.16 2.03 15 17 F -0.13 -3.84 17.18 44.97 0.77 -3.07 15 18 C -0.14 -4.06 9.96 22.40 0.22 -3.84 15 19 C 0.13 4.38 6.67 22.49 0.15 4.53 15 20 O -0.49 -16.52 12.73 -92.87 -1.18 -17.70 15 21 H 0.28 16.44 6.39 -92.70 -0.59 15.85 15 22 H 0.32 12.02 9.06 -89.69 -0.81 11.21 15 23 H 0.33 13.50 7.28 -89.70 -0.65 12.85 15 24 H 0.15 4.79 6.25 -2.91 -0.02 4.77 15 25 H 0.17 3.90 8.06 -2.91 -0.02 3.87 15 26 H 0.41 11.14 9.06 -74.05 -0.67 10.47 15 Total: -1.00 -60.08 242.35 2.32 -57.76 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.69 Total: 29.73 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 1.58 Total: -22.26 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -0.98 Total: -90.35 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -1.18 Total: -17.70 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 1.55 Total: -6.58 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.05 Total: 49.40 kcal Total: -60.08 2.32 -57.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095685794.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.570 kcal (2) G-P(sol) polarization free energy of solvation -60.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds