Wall clock time and date at job start Mon Mar 30 2020 03:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00028 * 2 1 4 4 H 1.48501 * 109.46861 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47013 * 119.99704 * 3 2 1 6 6 H 1.48499 * 109.46617 * 239.99970 * 3 2 1 7 7 C 1.37882 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99778 * 187.08253 * 7 2 1 9 9 C 1.50699 * 120.00137 * 7.09062 * 7 2 1 10 10 H 1.09006 * 109.46789 * 35.56569 * 9 7 2 11 11 N 1.46897 * 109.46911 * 275.57156 * 9 7 2 12 12 C 1.50691 * 109.47367 * 155.56504 * 9 7 2 13 13 C 1.38215 * 119.99274 * 99.72245 * 12 9 7 14 14 C 1.38211 * 120.11720 * 179.72555 * 13 12 9 15 15 C 1.38499 * 120.09710 * 0.55505 * 14 13 12 16 16 F 1.35091 * 120.00661 * 179.70271 * 15 14 13 17 17 C 1.38502 * 119.98453 * 359.72010 * 15 14 13 18 18 F 1.35094 * 120.05563 * 179.97438 * 17 15 14 19 19 C 1.38667 * 119.99773 * 280.00323 * 12 9 7 20 20 O 1.35949 * 120.04525 * 359.97438 * 19 12 9 21 21 H 0.97001 * 119.99600 * 175.38293 * 1 2 3 22 22 H 1.00905 * 110.99840 * 306.93352 * 11 9 7 23 23 H 1.00899 * 111.00679 * 70.88820 * 11 9 7 24 24 H 1.08005 * 119.94417 * 0.02562 * 13 12 9 25 25 H 1.07995 * 119.95407 * 180.25440 * 14 13 12 26 26 H 0.96698 * 114.00333 * 90.00448 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0783 -1.1976 0.1159 9 6 1.2597 -2.4943 -0.1600 10 1 0.4228 -2.3515 -0.8437 11 7 0.7543 -2.9337 1.1475 12 6 2.1901 -3.5409 -0.7166 13 6 2.7728 -4.4668 0.1280 14 6 3.6221 -5.4314 -0.3805 15 6 3.9010 -5.4660 -1.7367 16 9 4.7361 -6.4058 -2.2309 17 6 3.3238 -4.5366 -2.5860 18 9 3.5953 -4.5687 -3.9090 19 6 2.4661 -3.5712 -2.0752 20 8 1.8974 -2.6575 -2.9058 21 1 -0.4849 -0.8374 -0.0676 22 1 1.4966 -2.9643 1.8303 23 1 -0.0009 -2.3424 1.4606 24 1 2.5603 -4.4397 1.1866 25 1 4.0727 -6.1562 0.2813 26 1 2.4185 -1.8509 -3.0191 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095706455.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:09 Heat of formation + Delta-G solvation = -116.254258 kcal Electronic energy + Delta-G solvation = -15827.128346 eV Core-core repulsion = 12734.619698 eV Total energy + Delta-G solvation = -3092.508647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.11422 -48.19154 -39.29143 -36.18813 -34.99884 -31.68872 -29.48236 -29.12107 -25.71719 -23.26676 -22.58198 -20.65459 -18.39489 -17.37130 -17.19080 -16.64877 -16.10726 -15.79593 -15.34160 -14.66474 -14.11659 -13.93503 -13.87545 -13.42840 -13.22981 -12.85009 -12.28556 -12.01007 -11.41830 -11.21281 -10.97069 -10.45844 -10.28775 -9.88666 -9.60928 -8.85125 -8.39795 -8.16418 -7.48346 -6.60724 -4.43447 1.31414 1.37930 3.27354 3.29349 3.48168 3.71975 4.01537 4.31178 4.63539 4.78134 4.98751 5.09388 5.28817 5.50537 5.97839 6.02899 6.12442 6.34407 6.56811 6.66407 7.04701 7.18471 7.69374 8.05010 8.05851 8.28245 8.48526 8.56918 9.30917 10.71676 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.034307 B = 0.008656 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.967915 B = 3233.951908 C = 3561.815574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.033 3.967 3 Si 1.067 2.933 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.631 4.631 8 H 0.051 0.949 9 C 0.226 3.774 10 H 0.065 0.935 11 N -0.855 5.855 12 C -0.030 4.030 13 C -0.084 4.084 14 C -0.138 4.138 15 C 0.048 3.952 16 F -0.138 7.138 17 C 0.033 3.967 18 F -0.132 7.132 19 C 0.103 3.897 20 O -0.477 6.477 21 H 0.273 0.727 22 H 0.323 0.677 23 H 0.336 0.664 24 H 0.143 0.857 25 H 0.139 0.861 26 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -6.146 -0.633 8.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.175 4.175 3 Si 0.895 3.105 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.671 4.671 8 H 0.069 0.931 9 C 0.117 3.883 10 H 0.082 0.918 11 N -0.382 5.382 12 C -0.031 4.031 13 C -0.102 4.102 14 C -0.157 4.157 15 C 0.028 3.972 16 F -0.117 7.117 17 C 0.012 3.988 18 F -0.111 7.111 19 C 0.056 3.944 20 O -0.287 6.287 21 H 0.084 0.916 22 H 0.134 0.866 23 H 0.148 0.852 24 H 0.161 0.839 25 H 0.157 0.843 26 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 5.214 -5.637 -1.090 7.756 hybrid contribution 1.211 -0.522 -0.138 1.326 sum 6.425 -6.159 -1.228 8.984 Atomic orbital electron populations 1.70845 1.06838 1.31390 1.44018 1.25902 0.96342 1.02627 0.92593 0.83549 0.74981 0.75220 0.76748 1.20601 1.21374 1.21222 1.22437 0.95607 0.91887 1.57168 0.93098 1.18067 0.92800 0.88651 0.88814 0.91754 1.59536 1.14103 1.58637 1.05957 1.20722 0.96302 0.95453 0.90647 1.20865 0.95147 0.93065 1.01126 1.21027 1.01082 1.01342 0.92257 1.17379 0.96642 0.90781 0.92372 1.91461 1.69224 1.62743 1.88268 1.18080 1.01926 1.00587 0.78191 1.91455 1.92689 1.96133 1.30785 1.17993 0.94895 0.92066 0.89444 1.84738 1.48653 1.30116 1.65241 0.91566 0.86616 0.85246 0.83891 0.84349 0.74671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.63 55.43 0.76 -23.64 15 2 C 0.03 0.84 5.45 -17.82 -0.10 0.74 15 3 Si 1.07 22.90 29.91 -169.99 -5.08 17.82 15 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.29 -5.98 7.11 56.52 0.40 -5.57 15 6 H -0.29 -5.87 7.11 56.52 0.40 -5.47 15 7 C -0.63 -15.56 8.51 -34.44 -0.29 -15.86 15 8 H 0.05 1.28 7.81 -52.49 -0.41 0.87 15 9 C 0.23 5.13 2.21 -70.02 -0.15 4.97 15 10 H 0.06 1.66 6.75 -51.93 -0.35 1.31 15 11 N -0.85 -17.59 8.52 -6.65 -0.06 -17.64 15 12 C -0.03 -0.60 5.08 -104.48 -0.53 -1.13 15 13 C -0.08 -1.45 9.27 -39.60 -0.37 -1.82 15 14 C -0.14 -2.16 10.02 -39.49 -0.40 -2.55 15 15 C 0.05 0.84 7.30 -39.39 -0.29 0.55 15 16 F -0.14 -2.33 17.18 2.25 0.04 -2.29 15 17 C 0.03 0.62 7.32 -39.25 -0.29 0.33 15 18 F -0.13 -2.50 17.03 2.25 0.04 -2.46 15 19 C 0.10 2.06 6.67 -39.19 -0.26 1.80 15 20 O -0.48 -9.57 12.60 -19.58 -0.25 -9.81 15 21 H 0.27 7.40 6.21 -40.82 -0.25 7.15 15 22 H 0.32 6.20 7.63 -39.29 -0.30 5.90 15 23 H 0.34 7.21 8.43 -39.29 -0.33 6.88 15 24 H 0.14 2.27 6.43 -52.48 -0.34 1.94 15 25 H 0.14 1.71 8.06 -52.49 -0.42 1.28 15 26 H 0.40 6.74 9.06 45.56 0.41 7.15 15 LS Contribution 242.40 15.07 3.65 3.65 Total: -1.00 -27.30 242.40 -4.36 -31.66 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.79 Total: 15.67 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.67 Total: -12.96 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.70 Total: -41.28 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.25 Total: -9.81 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.08 Total: -4.75 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.08 Total: 17.82 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.30 -4.36 -31.66 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095706455.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.592 kcal (2) G-P(sol) polarization free energy of solvation -27.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds