Wall clock time and date at job start Mon Mar 30 2020 03:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99596 * 2 1 4 4 H 1.48503 * 109.47359 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47146 * 120.00296 * 3 2 1 6 6 H 1.48503 * 109.47238 * 239.99795 * 3 2 1 7 7 C 1.37873 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00422 * 177.80160 * 7 2 1 9 9 C 1.50699 * 119.99820 * 357.79358 * 7 2 1 10 10 H 1.08999 * 109.47604 * 324.77464 * 9 7 2 11 11 N 1.46899 * 109.46872 * 84.76950 * 9 7 2 12 12 C 1.50699 * 109.47336 * 204.76857 * 9 7 2 13 13 C 1.38635 * 120.02932 * 104.72431 * 12 9 7 14 14 O 1.35953 * 120.04764 * 0.02603 * 13 12 9 15 15 C 1.38910 * 119.90429 * 179.77051 * 13 12 9 16 16 F 1.35100 * 120.02561 * 180.25561 * 15 13 12 17 17 C 1.38325 * 119.95219 * 0.53299 * 15 13 12 18 18 C 1.38248 * 120.05246 * 359.71630 * 17 15 13 19 19 C 1.38385 * 120.02609 * 285.00424 * 12 9 7 20 20 F 1.35099 * 119.97729 * 359.97342 * 19 12 9 21 21 H 0.97002 * 119.99725 * 174.41331 * 1 2 3 22 22 H 1.00902 * 111.00548 * 292.70529 * 11 9 7 23 23 H 1.00898 * 111.00445 * 56.66450 * 11 9 7 24 24 H 0.96706 * 113.99757 * 90.00193 * 14 13 12 25 25 H 1.07993 * 119.97479 * 179.70427 * 17 15 13 26 26 H 1.07996 * 119.94582 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0840 -1.1943 -0.0364 9 6 1.2520 -2.4986 0.0491 10 1 0.3636 -2.3823 0.6697 11 7 0.8522 -2.8853 -1.3105 12 6 2.1378 -3.5676 0.6354 13 6 1.9348 -4.0003 1.9367 14 8 0.9361 -3.4612 2.6853 15 6 2.7498 -4.9891 2.4729 16 9 2.5507 -5.4163 3.7390 17 6 3.7689 -5.5322 1.7114 18 6 3.9731 -5.0956 0.4157 19 6 3.1584 -4.1140 -0.1229 20 9 3.3601 -3.6892 -1.3894 21 1 -0.4850 -0.8361 -0.0818 22 1 0.1649 -2.2462 -1.6809 23 1 1.6543 -2.9466 -1.9196 24 1 0.0919 -3.9268 2.6086 25 1 4.4058 -6.2976 2.1296 26 1 4.7696 -5.5205 -0.1771 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095716199.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:01 Heat of formation + Delta-G solvation = -113.698897 kcal Electronic energy + Delta-G solvation = -16028.592545 eV Core-core repulsion = 12936.194707 eV Total energy + Delta-G solvation = -3092.397839 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.62138 -48.42309 -39.18881 -36.24275 -35.05051 -31.62614 -29.54110 -29.05313 -25.61642 -23.38145 -22.38298 -20.79697 -18.36375 -17.43722 -17.18679 -16.66901 -16.11628 -15.45039 -14.94795 -14.74036 -14.10317 -13.87637 -13.82018 -13.48611 -12.94854 -12.73208 -12.39494 -12.07904 -11.46977 -11.24408 -10.88922 -10.56636 -10.20229 -9.73000 -9.57358 -8.72061 -8.43206 -8.11073 -7.39776 -6.51679 -4.30164 1.25459 1.42145 3.36298 3.38593 3.56954 3.66532 4.19986 4.41967 4.52179 4.76962 4.97661 5.16448 5.27276 5.43887 5.93799 6.11256 6.14393 6.33441 6.35320 6.51963 6.99247 7.20886 7.78341 7.94180 8.16105 8.35358 8.60994 8.66878 9.41039 10.82469 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.009979 C = 0.008869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.091030 B = 2805.254551 C = 3156.375622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.031 3.969 3 Si 1.068 2.932 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.619 4.619 8 H 0.050 0.950 9 C 0.225 3.775 10 H 0.065 0.935 11 N -0.863 5.863 12 C -0.053 4.053 13 C 0.094 3.906 14 O -0.473 6.473 15 C 0.058 3.942 16 F -0.138 7.138 17 C -0.139 4.139 18 C -0.140 4.140 19 C 0.110 3.890 20 F -0.125 7.125 21 H 0.271 0.729 22 H 0.333 0.667 23 H 0.331 0.669 24 H 0.386 0.614 25 H 0.140 0.860 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 -9.481 1.448 10.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.895 3.105 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.659 4.659 8 H 0.068 0.932 9 C 0.117 3.883 10 H 0.083 0.917 11 N -0.394 5.394 12 C -0.055 4.055 13 C 0.048 3.952 14 O -0.282 6.282 15 C 0.038 3.962 16 F -0.116 7.116 17 C -0.158 4.158 18 C -0.159 4.159 19 C 0.090 3.910 20 F -0.103 7.103 21 H 0.082 0.918 22 H 0.145 0.855 23 H 0.145 0.855 24 H 0.242 0.758 25 H 0.158 0.842 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.792 -8.112 2.033 9.638 hybrid contribution 0.339 -1.042 -0.353 1.152 sum 5.131 -9.155 1.679 10.628 Atomic orbital electron populations 1.70831 1.06745 1.30959 1.45028 1.25897 0.96393 1.02640 0.92572 0.83564 0.75025 0.75155 0.76747 1.20539 1.21252 1.21283 1.22415 0.94785 0.91736 1.56925 0.93210 1.18076 0.93767 0.88429 0.88069 0.91747 1.59668 1.17996 1.56225 1.05499 1.20650 0.96604 0.96193 0.92049 1.17912 0.93090 0.94061 0.90162 1.84950 1.20937 1.56027 1.66272 1.18038 0.99800 0.97537 0.80802 1.91453 1.94709 1.88826 1.36650 1.20608 0.98538 1.02539 0.94092 1.20882 1.00768 0.98449 0.95786 1.17281 0.96610 0.96631 0.80511 1.91371 1.93820 1.88807 1.36331 0.91820 0.85500 0.85481 0.75831 0.84172 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.97 13.59 55.43 0.75 -25.22 15 2 C 0.03 0.87 5.46 -17.82 -0.10 0.77 15 3 Si 1.07 24.90 29.90 -169.99 -5.08 19.82 15 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.62 -16.98 8.49 -34.44 -0.29 -17.28 15 8 H 0.05 1.40 7.81 -52.49 -0.41 0.99 15 9 C 0.23 5.53 2.38 -70.02 -0.17 5.36 15 10 H 0.06 1.69 5.98 -51.93 -0.31 1.38 15 11 N -0.86 -19.61 9.05 -6.65 -0.06 -19.67 15 12 C -0.05 -1.14 4.94 -104.42 -0.52 -1.66 15 13 C 0.09 1.88 6.68 -39.19 -0.26 1.62 15 14 O -0.47 -9.27 12.21 -19.59 -0.24 -9.51 15 15 C 0.06 1.01 7.31 -39.30 -0.29 0.72 15 16 F -0.14 -2.33 17.11 2.25 0.04 -2.29 15 17 C -0.14 -2.05 10.02 -39.55 -0.40 -2.45 15 18 C -0.14 -2.17 10.02 -39.49 -0.40 -2.57 15 19 C 0.11 2.14 7.01 -39.44 -0.28 1.86 15 20 F -0.12 -2.52 14.36 2.25 0.03 -2.48 15 21 H 0.27 7.68 6.30 -40.82 -0.26 7.42 15 22 H 0.33 7.74 8.52 -39.29 -0.33 7.41 15 23 H 0.33 7.40 6.24 -39.29 -0.25 7.16 15 24 H 0.39 5.63 9.06 45.56 0.41 6.04 15 25 H 0.14 1.59 8.06 -52.49 -0.42 1.16 15 26 H 0.14 1.70 8.06 -52.49 -0.42 1.27 15 LS Contribution 239.87 15.07 3.61 3.61 Total: -1.00 -30.32 239.87 -4.42 -34.74 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.79 Total: 14.61 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.69 Total: -13.61 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.69 Total: -44.89 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.24 Total: -9.51 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.07 Total: -4.78 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.32 -4.42 -34.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095716199.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.958 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds