Wall clock time and date at job start Mon Mar 30 2020 03:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99596 * 2 1 4 4 H 1.48503 * 109.47359 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47146 * 120.00296 * 3 2 1 6 6 H 1.48503 * 109.47238 * 239.99795 * 3 2 1 7 7 C 1.37873 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00422 * 177.80160 * 7 2 1 9 9 C 1.50699 * 119.99820 * 357.79358 * 7 2 1 10 10 H 1.08999 * 109.47604 * 324.77464 * 9 7 2 11 11 N 1.46899 * 109.46872 * 84.76950 * 9 7 2 12 12 C 1.50699 * 109.47336 * 204.76857 * 9 7 2 13 13 C 1.38635 * 120.02932 * 104.72431 * 12 9 7 14 14 O 1.35953 * 120.04764 * 0.02603 * 13 12 9 15 15 C 1.38910 * 119.90429 * 179.77051 * 13 12 9 16 16 F 1.35100 * 120.02561 * 180.25561 * 15 13 12 17 17 C 1.38325 * 119.95219 * 0.53299 * 15 13 12 18 18 C 1.38248 * 120.05246 * 359.71630 * 17 15 13 19 19 C 1.38385 * 120.02609 * 285.00424 * 12 9 7 20 20 F 1.35099 * 119.97729 * 359.97342 * 19 12 9 21 21 H 0.97002 * 119.99725 * 174.41331 * 1 2 3 22 22 H 1.00902 * 111.00548 * 292.70529 * 11 9 7 23 23 H 1.00898 * 111.00445 * 56.66450 * 11 9 7 24 24 H 0.96706 * 113.99757 * 90.00193 * 14 13 12 25 25 H 1.07993 * 119.97479 * 179.70427 * 17 15 13 26 26 H 1.07996 * 119.94582 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0840 -1.1943 -0.0364 9 6 1.2520 -2.4986 0.0491 10 1 0.3636 -2.3823 0.6697 11 7 0.8522 -2.8853 -1.3105 12 6 2.1378 -3.5676 0.6354 13 6 1.9348 -4.0003 1.9367 14 8 0.9361 -3.4612 2.6853 15 6 2.7498 -4.9891 2.4729 16 9 2.5507 -5.4163 3.7390 17 6 3.7689 -5.5322 1.7114 18 6 3.9731 -5.0956 0.4157 19 6 3.1584 -4.1140 -0.1229 20 9 3.3601 -3.6892 -1.3894 21 1 -0.4850 -0.8361 -0.0818 22 1 0.1649 -2.2462 -1.6809 23 1 1.6543 -2.9466 -1.9196 24 1 0.0919 -3.9268 2.6086 25 1 4.4058 -6.2976 2.1296 26 1 4.7696 -5.5205 -0.1771 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095716199.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:00 Heat of formation + Delta-G solvation = -136.781651 kcal Electronic energy + Delta-G solvation = -16029.593489 eV Core-core repulsion = 12936.194707 eV Total energy + Delta-G solvation = -3093.398782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.96243 -49.93107 -40.65327 -37.68035 -36.92155 -33.57609 -31.11641 -30.43513 -27.57254 -25.11506 -23.79845 -22.46989 -19.82717 -19.32181 -18.68918 -18.16421 -17.60751 -16.87678 -16.49975 -16.34070 -15.75134 -15.57626 -15.30706 -14.96289 -14.76837 -14.35860 -14.03410 -13.74410 -13.12362 -12.71852 -12.62047 -12.15369 -12.00513 -11.56285 -11.41481 -10.74303 -9.97131 -9.52576 -9.32801 -8.66272 -6.48083 -0.13115 0.03677 1.47634 1.53630 1.74033 2.27264 2.49785 2.83364 3.07643 3.14768 3.38112 3.64107 3.92075 4.07084 4.36538 4.53950 4.75486 4.89234 5.00129 5.01334 5.31365 5.70586 5.76825 5.98341 6.42864 6.45855 6.60205 6.75688 7.30011 8.65116 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.028797 B = 0.009979 C = 0.008869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.091030 B = 2805.254551 C = 3156.375622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 1.110 2.890 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.629 4.629 8 H 0.036 0.964 9 C 0.229 3.771 10 H 0.037 0.963 11 N -0.849 5.849 12 C -0.092 4.092 13 C 0.078 3.922 14 O -0.494 6.494 15 C 0.056 3.944 16 F -0.135 7.135 17 C -0.111 4.111 18 C -0.120 4.120 19 C 0.090 3.910 20 F -0.135 7.135 21 H 0.262 0.738 22 H 0.327 0.673 23 H 0.334 0.666 24 H 0.402 0.598 25 H 0.189 0.811 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.937 -10.910 1.740 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.217 4.217 3 Si 0.932 3.068 4 H -0.205 1.205 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.668 4.668 8 H 0.054 0.946 9 C 0.120 3.880 10 H 0.055 0.945 11 N -0.380 5.380 12 C -0.094 4.094 13 C 0.031 3.969 14 O -0.306 6.306 15 C 0.036 3.964 16 F -0.113 7.113 17 C -0.129 4.129 18 C -0.139 4.139 19 C 0.070 3.930 20 F -0.113 7.113 21 H 0.072 0.928 22 H 0.138 0.862 23 H 0.149 0.851 24 H 0.260 0.740 25 H 0.207 0.793 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.884 -9.574 2.320 12.018 hybrid contribution -0.292 -0.731 -0.403 0.885 sum 6.593 -10.305 1.917 12.383 Atomic orbital electron populations 1.70926 1.07450 1.30505 1.47093 1.27156 0.96576 1.05931 0.91989 0.83024 0.74312 0.71851 0.77658 1.20474 1.20387 1.19512 1.22669 0.94228 0.93481 1.56445 0.94558 1.17831 0.93054 0.88933 0.88230 0.94483 1.59614 1.17805 1.55555 1.04997 1.20504 0.98008 0.97507 0.93428 1.18125 0.93815 0.95083 0.89835 1.84877 1.22122 1.57272 1.66323 1.18138 1.00042 0.97099 0.81153 1.91465 1.94756 1.88622 1.36488 1.21151 0.96975 1.01745 0.93072 1.21312 1.00196 0.96215 0.96147 1.17632 0.97245 0.97906 0.80214 1.91335 1.93882 1.89170 1.36959 0.92784 0.86213 0.85149 0.73976 0.79345 0.79988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.65 13.59 21.45 0.29 -54.36 15 2 C -0.02 -0.88 5.46 84.65 0.46 -0.42 15 3 Si 1.11 50.40 29.90 68.60 2.05 52.45 15 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 7 C -0.63 -35.22 8.49 25.60 0.22 -35.00 15 8 H 0.04 2.08 7.81 -2.91 -0.02 2.06 15 9 C 0.23 11.56 2.38 43.42 0.10 11.66 15 10 H 0.04 2.04 5.98 -2.39 -0.01 2.03 15 11 N -0.85 -39.58 9.05 -174.96 -1.58 -41.16 15 12 C -0.09 -4.01 4.94 -19.73 -0.10 -4.10 15 13 C 0.08 3.07 6.68 22.53 0.15 3.23 15 14 O -0.49 -19.79 12.21 -93.02 -1.14 -20.93 15 15 C 0.06 1.79 7.31 22.45 0.16 1.95 15 16 F -0.13 -4.21 17.11 44.97 0.77 -3.44 15 17 C -0.11 -2.75 10.02 22.29 0.22 -2.52 15 18 C -0.12 -3.22 10.02 22.33 0.22 -3.00 15 19 C 0.09 3.37 7.01 22.36 0.16 3.52 15 20 F -0.13 -5.32 14.36 44.97 0.65 -4.67 15 21 H 0.26 15.47 6.30 -92.71 -0.58 14.89 15 22 H 0.33 15.73 8.52 -89.69 -0.76 14.97 15 23 H 0.33 15.16 6.24 -89.70 -0.56 14.60 15 24 H 0.40 12.19 9.06 -74.05 -0.67 11.52 15 25 H 0.19 2.92 8.06 -2.91 -0.02 2.90 15 26 H 0.18 3.34 8.06 -2.91 -0.02 3.31 15 Total: -1.00 -66.66 239.87 2.10 -64.56 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: -0.54 Total: 32.24 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 1.60 Total: -24.69 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -1.29 Total: -95.52 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -1.14 Total: -20.93 kcal Atomic # 9 Polarization: -9.52 SS G_CDS: 1.42 Total: -8.11 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Total: -66.66 2.10 -64.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095716199.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.224 kcal (2) G-P(sol) polarization free energy of solvation -66.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds