Wall clock time and date at job start Mon Mar 30 2020 03:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 11 11 N 1.46900 * 109.47676 * 59.99745 * 9 7 2 12 12 C 1.50707 * 109.47007 * 180.02562 * 9 7 2 13 13 C 1.38226 * 119.99974 * 264.72419 * 12 9 7 14 14 C 1.38420 * 120.06534 * 179.69584 * 13 12 9 15 15 F 1.35098 * 119.95791 * 180.29719 * 14 13 12 16 16 C 1.38477 * 120.07284 * 0.59800 * 14 13 12 17 17 C 1.38288 * 120.00779 * 359.67809 * 16 14 13 18 18 F 1.35099 * 120.03456 * 180.02562 * 17 16 14 19 19 C 1.38592 * 120.00319 * 84.99565 * 12 9 7 20 20 O 1.36002 * 120.04042 * 0.02562 * 19 12 9 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.00899 * 110.99700 * 59.99648 * 11 9 7 23 23 H 1.00893 * 110.99909 * 183.95320 * 11 9 7 24 24 H 1.08006 * 119.96836 * 359.97438 * 13 12 9 25 25 H 1.08002 * 119.99476 * 179.69709 * 16 14 13 26 26 H 0.96703 * 114.00030 * 89.99726 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 -0.8895 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6150 -0.0013 13 6 4.3476 -3.2312 1.1901 14 6 4.8032 -4.5383 1.1910 15 9 5.1230 -5.1404 2.3573 16 6 4.9374 -5.2272 -0.0028 17 6 4.6098 -4.6117 -1.1970 18 9 4.7400 -5.2835 -2.3619 19 6 4.1467 -3.3019 -1.1977 20 8 3.8243 -2.6944 -2.3710 21 1 -0.4850 0.8401 0.0004 22 1 3.6770 -0.9604 2.0387 23 1 5.0073 -0.4323 1.1919 24 1 4.2485 -2.6938 2.1217 25 1 5.2976 -6.2453 -0.0010 26 1 4.5610 -2.2255 -2.7866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104521667.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:13 Heat of formation + Delta-G solvation = -104.460405 kcal Electronic energy + Delta-G solvation = -15775.719936 eV Core-core repulsion = 12683.722708 eV Total energy + Delta-G solvation = -3091.997227 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.83894 -48.78778 -39.46607 -36.33313 -34.90874 -31.97399 -29.71956 -29.07355 -26.54715 -23.53884 -22.39770 -20.44337 -18.33780 -17.44555 -17.27728 -16.87624 -15.96322 -15.64610 -15.24952 -14.91236 -14.77442 -14.22745 -14.17564 -13.80518 -13.39186 -12.52627 -12.34990 -11.82702 -11.72335 -11.46600 -10.75961 -10.64641 -10.25809 -9.92975 -9.43080 -8.61383 -8.53132 -8.22575 -7.91571 -6.06465 -4.17805 1.10924 1.23927 3.50962 3.51707 3.55861 3.67136 3.98817 4.32778 4.57817 4.61610 4.84868 5.06733 5.17717 5.34431 5.71641 5.84829 6.02725 6.09215 6.22257 6.33155 6.81130 6.87704 7.45852 7.90798 7.95843 8.17071 8.53497 8.92141 9.53835 11.02958 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.030772 B = 0.009385 C = 0.008103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.700670 B = 2982.616540 C = 3454.513841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.083 3.917 3 Si 0.939 3.061 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.317 1.317 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.223 3.777 10 H 0.062 0.938 11 N -0.841 5.841 12 C -0.036 4.036 13 C -0.158 4.158 14 C 0.119 3.881 15 F -0.137 7.137 16 C -0.201 4.201 17 C 0.099 3.901 18 F -0.132 7.132 19 C 0.071 3.929 20 O -0.467 6.467 21 H 0.265 0.735 22 H 0.337 0.663 23 H 0.313 0.687 24 H 0.142 0.858 25 H 0.144 0.856 26 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.116 -6.179 0.060 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.121 4.121 3 Si 0.771 3.229 4 H -0.206 1.206 5 H -0.201 1.201 6 H -0.247 1.247 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.113 3.887 10 H 0.079 0.921 11 N -0.372 5.372 12 C -0.040 4.040 13 C -0.177 4.177 14 C 0.100 3.900 15 F -0.116 7.116 16 C -0.221 4.221 17 C 0.079 3.921 18 F -0.110 7.110 19 C 0.024 3.976 20 O -0.275 6.275 21 H 0.075 0.925 22 H 0.152 0.848 23 H 0.125 0.875 24 H 0.160 0.840 25 H 0.162 0.838 26 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 10.984 -5.723 -0.088 12.386 hybrid contribution 1.304 -0.293 0.145 1.344 sum 12.288 -6.016 0.057 13.682 Atomic orbital electron populations 1.69945 1.06790 1.27487 1.48941 1.24998 0.94635 1.00005 0.92481 0.85845 0.78293 0.80784 0.78013 1.20593 1.20074 1.24675 1.20559 0.86354 0.94809 1.53357 0.90989 1.18690 0.96989 0.82236 0.90737 0.92094 1.59374 1.13155 1.58451 1.06191 1.21468 0.91386 1.00769 0.90334 1.20957 1.03390 0.93473 0.99894 1.17224 1.00524 0.91507 0.80761 1.91490 1.90504 1.83479 1.46089 1.20710 1.08993 1.02123 0.90257 1.17755 1.01831 0.91088 0.81427 1.91483 1.93612 1.79871 1.46038 1.18255 1.01747 0.90045 0.87523 1.85029 1.38325 1.70688 1.33476 0.92539 0.84791 0.87508 0.84049 0.83840 0.76203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.96 55.43 0.77 -26.40 15 2 C 0.08 2.37 5.47 -17.82 -0.10 2.27 15 3 Si 0.94 23.03 26.03 -169.99 -4.42 18.60 15 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 15 5 H -0.28 -6.43 6.54 56.52 0.37 -6.06 15 6 H -0.32 -7.94 7.11 56.52 0.40 -7.54 15 7 C -0.51 -13.93 9.29 -34.44 -0.32 -14.25 15 8 H 0.07 2.20 7.98 -52.49 -0.42 1.78 15 9 C 0.22 4.79 2.06 -70.01 -0.14 4.65 15 10 H 0.06 1.34 6.74 -51.93 -0.35 0.99 15 11 N -0.84 -16.10 6.36 -6.65 -0.04 -16.14 15 12 C -0.04 -0.68 5.00 -104.49 -0.52 -1.21 15 13 C -0.16 -2.62 9.24 -39.52 -0.37 -2.99 15 14 C 0.12 1.84 7.30 -39.43 -0.29 1.56 15 15 F -0.14 -2.03 17.26 2.25 0.04 -2.00 15 16 C -0.20 -2.97 10.00 -39.47 -0.39 -3.37 15 17 C 0.10 1.62 7.31 -39.31 -0.29 1.34 15 18 F -0.13 -2.12 17.11 2.25 0.04 -2.08 15 19 C 0.07 1.29 6.68 -39.20 -0.26 1.02 15 20 O -0.47 -8.36 12.50 -19.75 -0.25 -8.61 15 21 H 0.27 7.57 8.31 -40.82 -0.34 7.24 15 22 H 0.34 6.15 7.21 -39.29 -0.28 5.87 15 23 H 0.31 4.95 9.06 -39.30 -0.36 4.60 15 24 H 0.14 2.16 6.29 -52.48 -0.33 1.83 15 25 H 0.14 1.76 8.06 -52.49 -0.42 1.34 15 26 H 0.38 4.74 9.06 45.56 0.41 5.15 15 LS Contribution 239.04 15.07 3.60 3.60 Total: -1.00 -31.40 239.04 -3.86 -35.26 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -0.91 Total: 8.74 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.68 Total: -10.97 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.73 Total: -42.54 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.25 Total: -8.61 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.08 Total: -4.08 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.42 Total: 18.60 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.40 -3.86 -35.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104521667.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.201 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds