Wall clock time and date at job start Mon Mar 30 2020 03:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 11 11 N 1.46900 * 109.47676 * 59.99745 * 9 7 2 12 12 C 1.50707 * 109.47007 * 180.02562 * 9 7 2 13 13 C 1.38226 * 119.99974 * 264.72419 * 12 9 7 14 14 C 1.38420 * 120.06534 * 179.69584 * 13 12 9 15 15 F 1.35098 * 119.95791 * 180.29719 * 14 13 12 16 16 C 1.38477 * 120.07284 * 0.59800 * 14 13 12 17 17 C 1.38288 * 120.00779 * 359.67809 * 16 14 13 18 18 F 1.35099 * 120.03456 * 180.02562 * 17 16 14 19 19 C 1.38592 * 120.00319 * 84.99565 * 12 9 7 20 20 O 1.36002 * 120.04042 * 0.02562 * 19 12 9 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.00899 * 110.99700 * 59.99648 * 11 9 7 23 23 H 1.00893 * 110.99909 * 183.95320 * 11 9 7 24 24 H 1.08006 * 119.96836 * 359.97438 * 13 12 9 25 25 H 1.08002 * 119.99476 * 179.69709 * 16 14 13 26 26 H 0.96703 * 114.00030 * 89.99726 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8752 -0.6797 -0.8895 11 7 4.0008 -0.5023 1.2001 12 6 4.0139 -2.6150 -0.0013 13 6 4.3476 -3.2312 1.1901 14 6 4.8032 -4.5383 1.1910 15 9 5.1230 -5.1404 2.3573 16 6 4.9374 -5.2272 -0.0028 17 6 4.6098 -4.6117 -1.1970 18 9 4.7400 -5.2835 -2.3619 19 6 4.1467 -3.3019 -1.1977 20 8 3.8243 -2.6944 -2.3710 21 1 -0.4850 0.8401 0.0004 22 1 3.6770 -0.9604 2.0387 23 1 5.0073 -0.4323 1.1919 24 1 4.2485 -2.6938 2.1217 25 1 5.2976 -6.2453 -0.0010 26 1 4.5610 -2.2255 -2.7866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104521667.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:12 Heat of formation + Delta-G solvation = -129.108408 kcal Electronic energy + Delta-G solvation = -15776.788753 eV Core-core repulsion = 12683.722708 eV Total energy + Delta-G solvation = -3093.066045 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.06372 -50.03355 -40.83195 -37.70056 -36.52147 -34.01875 -31.09493 -30.41468 -28.40114 -25.14470 -23.70191 -22.03326 -19.70128 -19.01689 -18.77720 -18.43829 -17.24605 -16.97396 -16.59458 -16.48289 -16.16451 -15.92073 -15.51525 -15.28902 -14.87174 -14.27879 -13.86858 -13.38676 -13.19138 -12.87049 -12.68144 -12.32693 -11.81052 -11.59670 -11.48724 -10.74172 -9.91946 -9.55119 -9.46874 -8.23157 -6.37257 -0.17958 -0.06504 1.54337 1.61214 1.73703 2.20337 2.53626 2.72298 3.05693 3.11101 3.36935 3.56772 3.80525 4.05493 4.15543 4.57652 4.69987 4.78366 4.80385 4.94616 5.22725 5.55997 5.63566 6.10852 6.41158 6.74314 6.76145 6.96026 7.38076 8.90562 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.030772 B = 0.009385 C = 0.008103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.700670 B = 2982.616540 C = 3454.513841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.025 3.975 3 Si 1.005 2.995 4 H -0.274 1.274 5 H -0.254 1.254 6 H -0.327 1.327 7 C -0.509 4.509 8 H 0.022 0.978 9 C 0.234 3.766 10 H 0.060 0.940 11 N -0.844 5.844 12 C -0.062 4.062 13 C -0.153 4.153 14 C 0.121 3.879 15 F -0.130 7.130 16 C -0.181 4.181 17 C 0.094 3.906 18 F -0.130 7.130 19 C 0.063 3.937 20 O -0.489 6.489 21 H 0.265 0.735 22 H 0.343 0.657 23 H 0.339 0.661 24 H 0.153 0.847 25 H 0.175 0.825 26 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.478 -6.520 0.522 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.174 4.174 3 Si 0.834 3.166 4 H -0.200 1.200 5 H -0.178 1.178 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.041 0.959 9 C 0.123 3.877 10 H 0.077 0.923 11 N -0.376 5.376 12 C -0.065 4.065 13 C -0.172 4.172 14 C 0.102 3.898 15 F -0.108 7.108 16 C -0.200 4.200 17 C 0.074 3.926 18 F -0.109 7.109 19 C 0.016 3.984 20 O -0.301 6.301 21 H 0.073 0.927 22 H 0.159 0.841 23 H 0.153 0.847 24 H 0.170 0.830 25 H 0.192 0.808 26 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 13.398 -6.079 0.373 14.717 hybrid contribution 0.597 -0.337 -0.001 0.686 sum 13.995 -6.416 0.372 15.400 Atomic orbital electron populations 1.70094 1.08775 1.28262 1.51801 1.25899 0.95198 1.03791 0.92471 0.84789 0.77533 0.76069 0.78230 1.20007 1.17780 1.25773 1.20789 0.89672 0.92545 1.51730 0.95915 1.18243 0.93347 0.84536 0.91536 0.92279 1.59022 1.15154 1.58002 1.05434 1.21171 0.93939 0.99838 0.91556 1.21048 1.02535 0.94110 0.99547 1.17143 1.00341 0.91106 0.81234 1.91516 1.90373 1.83232 1.45727 1.20991 1.06729 1.03149 0.89160 1.17727 1.02270 0.90583 0.82062 1.91488 1.93635 1.79664 1.46074 1.18421 1.01764 0.90848 0.87333 1.84954 1.40256 1.71199 1.33705 0.92652 0.84133 0.84683 0.82955 0.80761 0.73710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.51 13.96 21.45 0.30 -59.21 15 2 C 0.03 1.45 5.47 84.66 0.46 1.91 15 3 Si 1.00 47.27 26.03 68.60 1.79 49.06 15 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 15 5 H -0.25 -10.89 6.54 99.48 0.65 -10.24 15 6 H -0.33 -15.82 7.11 99.48 0.71 -15.11 15 7 C -0.51 -28.11 9.29 25.60 0.24 -27.87 15 8 H 0.02 1.44 7.98 -2.91 -0.02 1.41 15 9 C 0.23 9.79 2.06 43.42 0.09 9.88 15 10 H 0.06 2.50 6.74 -2.38 -0.02 2.49 15 11 N -0.84 -30.26 6.36 -174.94 -1.11 -31.37 15 12 C -0.06 -2.25 5.00 -19.78 -0.10 -2.34 15 13 C -0.15 -4.77 9.24 22.31 0.21 -4.56 15 14 C 0.12 3.39 7.30 22.37 0.16 3.56 15 15 F -0.13 -3.44 17.26 44.97 0.78 -2.66 15 16 C -0.18 -4.77 10.00 22.34 0.22 -4.55 15 17 C 0.09 2.87 7.31 22.45 0.16 3.03 15 18 F -0.13 -3.92 17.11 44.97 0.77 -3.16 15 19 C 0.06 2.20 6.68 22.52 0.15 2.35 15 20 O -0.49 -17.22 12.50 -93.57 -1.17 -18.39 15 21 H 0.26 15.63 8.31 -92.71 -0.77 14.86 15 22 H 0.34 11.79 7.21 -89.70 -0.65 11.15 15 23 H 0.34 9.58 9.06 -89.70 -0.81 8.76 15 24 H 0.15 4.30 6.29 -2.91 -0.02 4.29 15 25 H 0.17 3.50 8.06 -2.91 -0.02 3.48 15 26 H 0.40 9.57 9.06 -74.06 -0.67 8.90 15 Total: -1.00 -68.24 239.04 2.03 -66.21 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.92 Total: 18.11 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 1.60 Total: -18.59 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -0.81 Total: -90.58 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -1.17 Total: -18.39 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 1.55 Total: -5.82 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.79 Total: 49.06 kcal Total: -68.24 2.03 -66.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104521667.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.901 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds