Wall clock time and date at job start Mon Mar 30 2020 03:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00134 * 2 1 4 4 H 1.08994 * 109.52527 * 326.82671 * 3 2 1 5 5 C 1.53044 * 109.49933 * 206.74429 * 3 2 1 6 6 C 1.53040 * 109.54024 * 178.68105 * 5 3 2 7 7 H 1.09001 * 109.49615 * 301.38719 * 6 5 3 8 8 C 1.52997 * 109.49560 * 181.32016 * 6 5 3 9 9 C 1.52998 * 109.46822 * 175.00295 * 8 6 5 10 10 O 1.42902 * 109.47233 * 179.97438 * 9 8 6 11 11 C 1.52757 * 109.38192 * 61.24387 * 6 5 3 12 12 N 1.46930 * 109.00780 * 305.58950 * 11 6 5 13 13 C 1.36943 * 120.62917 * 233.58630 * 12 11 6 14 14 H 1.07996 * 120.00202 * 148.44468 * 13 12 11 15 15 C 1.38811 * 119.99537 * 328.16214 * 13 12 11 16 16 N 1.31626 * 120.00018 * 162.02888 * 15 13 12 17 17 Si 1.86798 * 120.00443 * 342.02319 * 15 13 12 18 18 H 1.48504 * 109.46910 * 92.07513 * 17 15 13 19 19 H 1.48501 * 109.47300 * 212.07644 * 17 15 13 20 20 H 1.48499 * 109.47207 * 332.07786 * 17 15 13 21 21 C 1.46927 * 118.74122 * 53.30844 * 12 11 6 22 22 H 1.09000 * 109.46999 * 295.32779 * 1 2 3 23 23 H 1.08997 * 109.47140 * 55.32403 * 1 2 3 24 24 H 1.08996 * 109.47108 * 175.32965 * 1 2 3 25 25 H 1.00901 * 110.99677 * 123.95321 * 2 1 3 26 26 H 1.08994 * 109.46052 * 298.70757 * 5 3 2 27 27 H 1.09003 * 109.45627 * 58.66300 * 5 3 2 28 28 H 1.09001 * 109.47389 * 294.99860 * 8 6 5 29 29 H 1.08995 * 109.47654 * 55.00395 * 8 6 5 30 30 H 1.08998 * 109.47197 * 299.99658 * 9 8 6 31 31 H 1.09001 * 109.47585 * 59.99770 * 9 8 6 32 32 H 0.96697 * 114.00398 * 180.02562 * 10 9 8 33 33 H 1.08997 * 109.51453 * 185.70447 * 11 6 5 34 34 H 1.09002 * 109.43285 * 65.41951 * 11 6 5 35 35 H 0.96991 * 120.00423 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.58443 * 66.42983 * 21 12 11 37 37 H 1.08998 * 109.58848 * 186.85808 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3233 2.0196 -0.5621 5 6 3.3813 1.3866 -0.6492 6 6 3.9167 2.8199 -0.6794 7 1 3.2266 3.4544 -1.2356 8 6 5.2877 2.8387 -1.3582 9 6 5.7668 4.2848 -1.5001 10 8 7.0476 4.3024 -2.1335 11 6 4.0464 3.3429 0.7500 12 7 2.7536 3.1954 1.4326 13 6 2.1609 4.2682 2.0435 14 1 1.0840 4.3375 2.0875 15 6 2.9442 5.2635 2.6114 16 7 2.4208 6.4415 2.8776 17 14 4.7413 4.9313 2.9981 18 1 5.5798 5.3376 1.8417 19 1 5.1417 5.7097 4.1977 20 1 4.9311 3.4823 3.2623 21 6 2.1060 1.8766 1.4420 22 1 -0.3633 0.4396 0.9289 23 1 -0.3633 0.5847 -0.8451 24 1 -0.3633 -1.0242 -0.0837 25 1 1.8305 -0.5261 0.7814 26 1 4.0594 0.7577 -0.0725 27 1 3.3094 1.0043 -1.6675 28 1 6.0003 2.2776 -0.7535 29 1 5.2108 2.3830 -2.3453 30 1 5.0543 4.8459 -2.1048 31 1 5.8438 4.7406 -0.5130 32 1 7.4137 5.1889 -2.2560 33 1 4.3303 4.3950 0.7284 34 1 4.8065 2.7679 1.2790 35 1 2.9682 7.1371 3.2741 36 1 2.7047 1.1797 2.0285 37 1 1.1101 1.9617 1.8767 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108012334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:10 Heat of formation + Delta-G solvation = -37.569032 kcal Electronic energy + Delta-G solvation = -16975.833587 eV Core-core repulsion = 14367.209354 eV Total energy + Delta-G solvation = -2608.624233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.77632 -36.79112 -35.14645 -33.63697 -31.51306 -29.90912 -27.71922 -25.34181 -24.78390 -22.95010 -21.71226 -20.24365 -19.60383 -17.20107 -16.82153 -15.55403 -15.42476 -14.88944 -14.35929 -14.24302 -13.88048 -13.47373 -13.33548 -13.01007 -12.70092 -12.19551 -11.96295 -11.71293 -11.56601 -11.37894 -11.14822 -10.73415 -10.58804 -10.55640 -10.14199 -9.88571 -9.82443 -9.64736 -9.48560 -8.77551 -8.17774 -6.91588 -6.00735 -3.41255 3.25837 3.43671 3.47809 4.24301 4.47567 4.58333 4.97249 5.20056 5.31956 5.34759 5.38976 5.47862 5.57006 5.66462 5.73337 5.78416 5.82022 5.95257 6.03029 6.15593 6.18213 6.25189 6.32852 6.38798 6.49373 6.58668 6.63101 6.74156 6.91389 7.29706 7.60098 7.74866 7.94858 8.28582 8.89234 9.65909 10.05736 11.15158 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.012813 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.065559 B = 2184.760057 C = 3551.895754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.691 5.691 3 C 0.066 3.934 4 H 0.077 0.923 5 C -0.088 4.088 6 C -0.103 4.103 7 H 0.074 0.926 8 C -0.108 4.108 9 C 0.069 3.931 10 O -0.580 6.580 11 C 0.131 3.869 12 N -0.603 5.603 13 C -0.262 4.262 14 H 0.083 0.917 15 C 0.027 3.973 16 N -0.908 5.908 17 Si 0.883 3.117 18 H -0.287 1.287 19 H -0.302 1.302 20 H -0.270 1.270 21 C 0.125 3.875 22 H 0.023 0.977 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.337 0.663 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.376 0.624 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.022 0.978 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 -8.338 -7.349 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.321 5.321 3 C -0.045 4.045 4 H 0.095 0.905 5 C -0.127 4.127 6 C -0.124 4.124 7 H 0.092 0.908 8 C -0.147 4.147 9 C -0.008 4.008 10 O -0.385 6.385 11 C 0.006 3.994 12 N -0.326 5.326 13 C -0.391 4.391 14 H 0.100 0.900 15 C -0.172 4.172 16 N -0.551 5.551 17 Si 0.714 3.286 18 H -0.215 1.215 19 H -0.230 1.230 20 H -0.195 1.195 21 C -0.002 4.002 22 H 0.042 0.958 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.154 0.846 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.222 0.778 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.683 -8.891 -7.926 12.210 hybrid contribution 0.847 0.912 1.270 1.778 sum 3.529 -7.980 -6.656 10.974 Atomic orbital electron populations 1.22177 0.88343 1.01184 1.00390 1.60601 1.07421 1.14626 1.49439 1.22181 0.96349 0.88038 0.97961 0.90493 1.21359 0.95528 0.95516 1.00250 1.21561 0.95141 0.97260 0.98469 0.90783 1.21497 0.96889 0.95227 1.01042 1.22362 0.83825 0.98142 0.96504 1.86424 1.35605 1.33589 1.82887 1.21376 0.88264 0.99700 0.90072 1.44243 1.21268 1.05505 1.61618 1.18891 0.92597 0.97353 1.30234 0.89974 1.25375 0.97851 0.96025 0.97954 1.69811 1.36662 1.02674 1.45929 0.86927 0.86308 0.78269 0.77139 1.21479 1.23009 1.19506 1.21626 0.97096 0.87623 0.93866 0.95821 0.91977 0.92069 0.84559 0.92586 0.92235 0.91596 0.91570 0.93498 0.93093 0.77827 0.91049 0.95764 0.92698 0.96046 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.55 60.06 0.63 1.00 16 2 N -0.69 -9.83 6.61 -113.88 -0.75 -10.58 16 3 C 0.07 1.10 2.62 -67.59 -0.18 0.92 16 4 H 0.08 1.39 7.70 -51.93 -0.40 0.99 16 5 C -0.09 -1.43 4.78 -26.69 -0.13 -1.56 16 6 C -0.10 -1.82 2.32 -90.73 -0.21 -2.03 16 7 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 8 C -0.11 -1.71 5.06 -26.73 -0.14 -1.85 16 9 C 0.07 1.09 6.80 37.16 0.25 1.34 16 10 O -0.58 -8.47 13.66 -35.23 -0.48 -8.95 16 11 C 0.13 2.83 3.07 -3.93 -0.01 2.82 16 12 N -0.60 -14.25 2.71 -172.58 -0.47 -14.72 16 13 C -0.26 -7.30 10.01 -15.06 -0.15 -7.45 16 14 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 15 C 0.03 0.78 5.24 -17.43 -0.09 0.69 16 16 N -0.91 -27.61 13.97 55.49 0.78 -26.83 16 17 Si 0.88 22.35 24.37 -169.99 -4.14 18.21 16 18 H -0.29 -6.91 6.67 56.52 0.38 -6.54 16 19 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 20 H -0.27 -6.79 6.66 56.52 0.38 -6.41 16 21 C 0.13 2.48 5.82 -3.71 -0.02 2.45 16 22 H 0.02 0.31 7.84 -51.93 -0.41 -0.10 16 23 H 0.06 0.79 7.94 -51.93 -0.41 0.38 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.34 4.46 8.47 -39.29 -0.33 4.12 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.89 6.70 -51.93 -0.35 0.54 16 32 H 0.38 3.74 9.12 45.56 0.42 4.15 16 33 H 0.07 1.67 3.61 -51.93 -0.19 1.48 16 34 H 0.02 0.53 7.00 -51.93 -0.36 0.17 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.02 0.42 8.04 -51.93 -0.42 0.00 16 37 H 0.06 1.18 7.63 -51.93 -0.40 0.78 16 LS Contribution 285.45 15.07 4.30 4.30 Total: -1.00 -30.97 285.45 -6.23 -37.20 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.42 Total: 5.04 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.04 Total: -3.66 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.45 Total: -52.13 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.48 Total: -8.95 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.21 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.97 -6.23 -37.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.371 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds