Wall clock time and date at job start Mon Mar 30 2020 03:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00134 * 2 1 4 4 H 1.08994 * 109.52527 * 326.82671 * 3 2 1 5 5 C 1.53044 * 109.49933 * 206.74429 * 3 2 1 6 6 C 1.53040 * 109.54024 * 178.68105 * 5 3 2 7 7 H 1.09001 * 109.49615 * 301.38719 * 6 5 3 8 8 C 1.52997 * 109.49560 * 181.32016 * 6 5 3 9 9 C 1.52998 * 109.46822 * 175.00295 * 8 6 5 10 10 O 1.42902 * 109.47233 * 179.97438 * 9 8 6 11 11 C 1.52757 * 109.38192 * 61.24387 * 6 5 3 12 12 N 1.46930 * 109.00780 * 305.58950 * 11 6 5 13 13 C 1.36943 * 120.62917 * 233.58630 * 12 11 6 14 14 H 1.07996 * 120.00202 * 148.44468 * 13 12 11 15 15 C 1.38811 * 119.99537 * 328.16214 * 13 12 11 16 16 N 1.31626 * 120.00018 * 162.02888 * 15 13 12 17 17 Si 1.86798 * 120.00443 * 342.02319 * 15 13 12 18 18 H 1.48504 * 109.46910 * 92.07513 * 17 15 13 19 19 H 1.48501 * 109.47300 * 212.07644 * 17 15 13 20 20 H 1.48499 * 109.47207 * 332.07786 * 17 15 13 21 21 C 1.46927 * 118.74122 * 53.30844 * 12 11 6 22 22 H 1.09000 * 109.46999 * 295.32779 * 1 2 3 23 23 H 1.08997 * 109.47140 * 55.32403 * 1 2 3 24 24 H 1.08996 * 109.47108 * 175.32965 * 1 2 3 25 25 H 1.00901 * 110.99677 * 123.95321 * 2 1 3 26 26 H 1.08994 * 109.46052 * 298.70757 * 5 3 2 27 27 H 1.09003 * 109.45627 * 58.66300 * 5 3 2 28 28 H 1.09001 * 109.47389 * 294.99860 * 8 6 5 29 29 H 1.08995 * 109.47654 * 55.00395 * 8 6 5 30 30 H 1.08998 * 109.47197 * 299.99658 * 9 8 6 31 31 H 1.09001 * 109.47585 * 59.99770 * 9 8 6 32 32 H 0.96697 * 114.00398 * 180.02562 * 10 9 8 33 33 H 1.08997 * 109.51453 * 185.70447 * 11 6 5 34 34 H 1.09002 * 109.43285 * 65.41951 * 11 6 5 35 35 H 0.96991 * 120.00423 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.58443 * 66.42983 * 21 12 11 37 37 H 1.08998 * 109.58848 * 186.85808 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3233 2.0196 -0.5621 5 6 3.3813 1.3866 -0.6492 6 6 3.9167 2.8199 -0.6794 7 1 3.2266 3.4544 -1.2356 8 6 5.2877 2.8387 -1.3582 9 6 5.7668 4.2848 -1.5001 10 8 7.0476 4.3024 -2.1335 11 6 4.0464 3.3429 0.7500 12 7 2.7536 3.1954 1.4326 13 6 2.1609 4.2682 2.0435 14 1 1.0840 4.3375 2.0875 15 6 2.9442 5.2635 2.6114 16 7 2.4208 6.4415 2.8776 17 14 4.7413 4.9313 2.9981 18 1 5.5798 5.3376 1.8417 19 1 5.1417 5.7097 4.1977 20 1 4.9311 3.4823 3.2623 21 6 2.1060 1.8766 1.4420 22 1 -0.3633 0.4396 0.9289 23 1 -0.3633 0.5847 -0.8451 24 1 -0.3633 -1.0242 -0.0837 25 1 1.8305 -0.5261 0.7814 26 1 4.0594 0.7577 -0.0725 27 1 3.3094 1.0043 -1.6675 28 1 6.0003 2.2776 -0.7535 29 1 5.2108 2.3830 -2.3453 30 1 5.0543 4.8459 -2.1048 31 1 5.8438 4.7406 -0.5130 32 1 7.4137 5.1889 -2.2560 33 1 4.3303 4.3950 0.7284 34 1 4.8065 2.7679 1.2790 35 1 2.9682 7.1371 3.2741 36 1 2.7047 1.1797 2.0285 37 1 1.1101 1.9617 1.8767 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108012334.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:10 Heat of formation + Delta-G solvation = -62.884863 kcal Electronic energy + Delta-G solvation = -16976.931364 eV Core-core repulsion = 14367.209354 eV Total energy + Delta-G solvation = -2609.722010 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26862 -37.97541 -36.55777 -35.29249 -33.44912 -31.31744 -29.13860 -27.26423 -26.03185 -24.20408 -23.49334 -21.60131 -21.11703 -18.90673 -18.30092 -17.25484 -16.81378 -16.35500 -15.77436 -15.60658 -15.49134 -15.02841 -14.72361 -14.52918 -14.37716 -13.66019 -13.40647 -13.24939 -12.96967 -12.88210 -12.60137 -12.39368 -12.18349 -12.08741 -11.69257 -11.54970 -11.39801 -11.30381 -10.86087 -10.78079 -9.54329 -8.78893 -8.22350 -5.59123 1.24365 1.36555 1.45680 2.35930 2.94727 3.08916 3.33318 3.54047 3.90143 4.00789 4.02030 4.11885 4.29779 4.39379 4.40240 4.52369 4.55780 4.63968 4.68297 4.77324 4.92341 4.92980 4.98229 5.04202 5.06982 5.16383 5.18465 5.34844 5.48992 5.82752 6.03421 6.10606 6.49550 6.82189 6.87663 7.55618 7.98222 8.97533 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.012813 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.065559 B = 2184.760057 C = 3551.895754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.684 5.684 3 C 0.079 3.921 4 H 0.061 0.939 5 C -0.082 4.082 6 C -0.093 4.093 7 H 0.064 0.936 8 C -0.103 4.103 9 C 0.071 3.929 10 O -0.587 6.587 11 C 0.129 3.871 12 N -0.617 5.617 13 C -0.253 4.253 14 H 0.047 0.953 15 C -0.026 4.026 16 N -0.954 5.954 17 Si 0.943 3.057 18 H -0.269 1.269 19 H -0.308 1.308 20 H -0.265 1.265 21 C 0.124 3.876 22 H 0.015 0.985 23 H 0.059 0.941 24 H 0.086 0.914 25 H 0.346 0.654 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.395 0.605 33 H 0.050 0.950 34 H 0.027 0.973 35 H 0.263 0.737 36 H 0.033 0.967 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.128 -10.357 -8.697 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.314 5.314 3 C -0.033 4.033 4 H 0.080 0.920 5 C -0.120 4.120 6 C -0.114 4.114 7 H 0.082 0.918 8 C -0.141 4.141 9 C -0.007 4.007 10 O -0.395 6.395 11 C 0.004 3.996 12 N -0.342 5.342 13 C -0.383 4.383 14 H 0.065 0.935 15 C -0.222 4.222 16 N -0.600 5.600 17 Si 0.772 3.228 18 H -0.195 1.195 19 H -0.237 1.237 20 H -0.189 1.189 21 C -0.003 4.003 22 H 0.033 0.967 23 H 0.078 0.922 24 H 0.105 0.895 25 H 0.164 0.836 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.245 0.755 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.068 -10.948 -9.304 14.932 hybrid contribution 0.328 1.509 1.665 2.271 sum 4.396 -9.439 -7.639 12.914 Atomic orbital electron populations 1.22252 0.87329 1.02733 0.99871 1.60634 1.08356 1.12636 1.49752 1.21934 0.96878 0.89125 0.95339 0.92039 1.21326 0.94797 0.94464 1.01441 1.21405 0.96427 0.97940 0.95636 0.91759 1.21433 0.95395 0.95450 1.01783 1.22259 0.84642 0.98118 0.95688 1.86373 1.35015 1.35612 1.82534 1.21405 0.87008 0.98781 0.92392 1.44366 1.22028 1.05890 1.61886 1.18801 0.91356 0.98481 1.29636 0.93520 1.25963 1.02002 0.95739 0.98473 1.69936 1.38415 1.03726 1.47914 0.85946 0.81788 0.78064 0.77026 1.19532 1.23715 1.18942 1.21792 0.96168 0.86041 0.96310 0.96662 0.92208 0.89506 0.83589 0.91776 0.90226 0.91424 0.89616 0.92836 0.95177 0.75538 0.93136 0.95511 0.92788 0.94950 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.55 127.69 1.35 1.99 16 2 N -0.68 -17.59 6.61 -514.22 -3.40 -20.99 16 3 C 0.08 2.49 2.62 45.00 0.12 2.61 16 4 H 0.06 2.16 7.70 -2.39 -0.02 2.14 16 5 C -0.08 -2.40 4.78 30.62 0.15 -2.26 16 6 C -0.09 -3.09 2.32 -10.86 -0.03 -3.11 16 7 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 8 C -0.10 -2.93 5.06 30.59 0.15 -2.78 16 9 C 0.07 2.07 6.80 71.98 0.49 2.56 16 10 O -0.59 -15.55 13.66 -148.98 -2.04 -17.58 16 11 C 0.13 5.39 3.07 86.22 0.26 5.65 16 12 N -0.62 -29.07 2.71 -699.92 -1.90 -30.97 16 13 C -0.25 -14.44 10.01 84.03 0.84 -13.60 16 14 H 0.05 2.94 8.06 -2.91 -0.02 2.91 16 15 C -0.03 -1.54 5.24 84.86 0.45 -1.09 16 16 N -0.95 -59.78 13.97 21.65 0.30 -59.47 16 17 Si 0.94 46.56 24.37 68.60 1.67 48.24 16 18 H -0.27 -12.37 6.67 99.48 0.66 -11.71 16 19 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 20 H -0.26 -12.69 6.66 99.48 0.66 -12.03 16 21 C 0.12 4.77 5.82 86.36 0.50 5.28 16 22 H 0.01 0.37 7.84 -2.39 -0.02 0.35 16 23 H 0.06 1.41 7.94 -2.39 -0.02 1.39 16 24 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.35 8.09 8.47 -89.69 -0.76 7.33 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.03 1.00 6.70 -2.39 -0.02 0.99 16 32 H 0.40 6.84 9.12 -74.06 -0.68 6.16 16 33 H 0.05 2.32 3.61 -2.39 -0.01 2.32 16 34 H 0.03 1.12 7.00 -2.39 -0.02 1.10 16 35 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.03 1.20 8.04 -2.39 -0.02 1.18 16 37 H 0.04 1.84 7.63 -2.39 -0.02 1.82 16 Total: -1.00 -66.76 285.45 -1.54 -68.31 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -0.47 Total: 17.23 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: 4.28 Total: -4.76 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -5.00 Total: -111.44 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -2.04 Total: -17.58 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.67 Total: 48.24 kcal Total: -66.76 -1.54 -68.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108012334.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.421 kcal (2) G-P(sol) polarization free energy of solvation -66.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds