Wall clock time and date at job start Mon Mar 30 2020 03:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29514 * 1 3 3 Si 1.86800 * 119.99963 * 2 1 4 4 H 1.48505 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47161 * 300.00074 * 3 2 1 6 6 H 1.48504 * 109.46866 * 60.00199 * 3 2 1 7 7 C 1.46534 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99745 * 192.00266 * 7 2 1 9 9 C 1.40345 * 119.99959 * 12.00814 * 7 2 1 10 10 C 1.41274 * 120.26867 * 25.72626 * 9 7 2 11 11 C 1.37651 * 119.72535 * 180.25563 * 10 9 7 12 12 F 1.35096 * 119.86590 * 179.77019 * 11 10 9 13 13 C 1.39011 * 120.26893 * 359.73981 * 11 10 9 14 14 C 1.38968 * 120.54341 * 0.02562 * 13 11 10 15 15 F 1.35101 * 119.86030 * 180.02562 * 14 13 11 16 16 C 1.37685 * 120.27033 * 359.97438 * 14 13 11 17 17 N 1.48025 * 120.13832 * 179.97438 * 16 14 13 18 18 O 1.31703 * 119.99471 * 90.00513 * 17 16 14 19 19 O 1.31698 * 120.00037 * 270.00021 * 17 16 14 20 20 H 0.96995 * 119.99772 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.13372 * 0.02562 * 10 9 7 22 22 H 1.07997 * 119.72693 * 180.02562 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6177 0.0000 4 1 3.6892 1.3464 0.0006 5 1 1.8704 2.3964 -1.2125 6 1 1.8704 2.3964 1.2126 7 6 2.0278 -1.2690 0.0006 8 1 3.0901 -1.2791 0.1951 9 6 1.3491 -2.4713 -0.2518 10 6 0.1586 -2.4708 -1.0125 11 6 -0.5008 -3.6558 -1.2487 12 9 -1.6420 -3.6580 -1.9718 13 6 0.0030 -4.8502 -0.7468 14 6 1.1757 -4.8642 -0.0013 15 9 1.6532 -6.0330 0.4795 16 6 1.8534 -3.6920 0.2485 17 7 3.1019 -3.7102 1.0434 18 8 4.2632 -3.8650 0.4418 19 8 3.0514 -3.5715 2.3521 20 1 -0.4849 0.8400 0.0004 21 1 -0.2344 -1.5441 -1.4038 22 1 -0.5213 -5.7748 -0.9378 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123439664.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:35 Heat of formation + Delta-G solvation = -74.735217 kcal Electronic energy + Delta-G solvation = -15465.479129 eV Core-core repulsion = 12238.937788 eV Total energy + Delta-G solvation = -3226.541341 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.034 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.35019 -49.91523 -40.44525 -38.84658 -36.01696 -35.42826 -32.62332 -31.65923 -28.35130 -26.77418 -23.84763 -23.06216 -20.42137 -19.44438 -19.32024 -18.59743 -18.27682 -17.21236 -17.04849 -16.64782 -16.36774 -16.17911 -15.62294 -15.00833 -14.61660 -14.03112 -13.61800 -13.28480 -13.16291 -12.70286 -12.53940 -12.50076 -12.15610 -12.02189 -11.83514 -11.44362 -10.19847 -9.96117 -9.28209 -7.16500 -1.22944 -0.11669 0.25644 0.34676 1.27467 1.31334 1.47141 2.01658 2.04845 2.72295 2.79737 3.39455 3.86679 4.10239 4.20931 4.37830 4.51471 4.78743 4.92447 5.12868 5.28498 5.48157 5.64268 5.87247 5.97853 6.10426 7.63201 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.021745 B = 0.012913 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.363688 B = 2167.806737 C = 3253.254952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.043 3.957 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.240 1.240 6 H -0.250 1.250 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.139 3.861 10 C -0.200 4.200 11 C 0.162 3.838 12 F -0.135 7.135 13 C -0.300 4.300 14 C 0.202 3.798 15 F -0.141 7.141 16 C -0.220 4.220 17 N 0.011 4.989 18 O -0.181 6.181 19 O -0.180 6.180 20 H 0.322 0.678 21 H 0.154 0.846 22 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.340 2.534 -2.684 4.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.185 1.185 5 H -0.163 1.163 6 H -0.174 1.174 7 C -0.457 4.457 8 H 0.101 0.899 9 C 0.134 3.866 10 C -0.220 4.220 11 C 0.142 3.858 12 F -0.113 7.113 13 C -0.321 4.321 14 C 0.181 3.819 15 F -0.120 7.120 16 C -0.303 4.303 17 N 0.505 4.495 18 O -0.385 6.385 19 O -0.384 6.384 20 H 0.137 0.863 21 H 0.171 0.829 22 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.263 2.615 -3.085 5.196 hybrid contribution 0.631 0.021 0.409 0.752 sum -2.632 2.636 -2.676 4.586 Atomic orbital electron populations 1.68971 1.09925 1.34494 1.22596 1.28443 0.95688 1.04706 0.89862 0.84850 0.79079 0.73461 0.80803 1.18497 1.16272 1.17397 1.21367 0.96430 0.90846 1.37107 0.89893 1.16816 0.91733 0.88948 0.89094 1.21366 0.98110 0.97678 1.04830 1.17140 0.82833 0.93646 0.92199 1.91445 1.47284 1.97407 1.75186 1.20290 0.99598 0.99632 1.12544 1.16549 0.92803 0.77538 0.95016 1.91464 1.87929 1.46308 1.86255 1.20260 0.93123 0.97692 1.19265 1.50208 1.04233 0.92789 1.02278 1.96143 1.15693 1.53831 1.72793 1.96152 1.96077 1.54048 0.92112 0.86348 0.82879 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -30.22 10.85 23.21 0.25 -29.97 14 2 C 0.04 1.75 5.41 87.20 0.47 2.22 14 3 Si 1.00 30.75 29.66 68.60 2.03 32.79 14 4 H -0.26 -8.55 7.11 99.48 0.71 -7.84 14 5 H -0.24 -6.57 7.11 99.48 0.71 -5.87 14 6 H -0.25 -7.24 7.11 99.48 0.71 -6.53 14 7 C -0.43 -20.95 8.97 24.95 0.22 -20.73 14 8 H 0.08 4.16 7.63 -2.91 -0.02 4.14 14 9 C 0.14 6.86 5.61 -21.28 -0.12 6.74 14 10 C -0.20 -9.00 8.73 22.88 0.20 -8.80 14 11 C 0.16 6.67 7.28 22.32 0.16 6.84 14 12 F -0.13 -5.06 17.26 44.97 0.78 -4.29 14 13 C -0.30 -12.05 10.02 22.63 0.23 -11.82 14 14 C 0.20 9.16 7.28 22.31 0.16 9.32 14 15 F -0.14 -6.21 17.08 44.97 0.77 -5.44 14 16 C -0.22 -11.01 6.32 36.98 0.23 -10.78 14 17 N 0.01 0.58 3.90 -45.02 -0.18 0.40 14 18 O -0.18 -9.19 19.97 3.51 0.07 -9.12 14 19 O -0.18 -9.32 19.97 3.52 0.07 -9.25 14 20 H 0.32 11.00 8.27 -92.71 -0.77 10.24 14 21 H 0.15 6.78 6.07 -2.91 -0.02 6.76 14 22 H 0.16 5.50 8.06 -2.91 -0.02 5.48 14 Total: -1.00 -52.16 229.66 6.65 -45.51 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.29 Total: 6.38 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 1.56 Total: -27.01 kcal Atomic # 7 Polarization: -29.65 SS G_CDS: 0.08 Total: -29.57 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.14 Total: -18.37 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 1.54 Total: -9.72 kcal Atomic # 14 Polarization: 30.75 SS G_CDS: 2.03 Total: 32.79 kcal Total: -52.16 6.65 -45.51 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123439664.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.224 kcal (2) G-P(sol) polarization free energy of solvation -52.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds