Wall clock time and date at job start Mon Mar 30 2020 03:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47180 * 120.00471 * 2 1 3 5 5 H 1.08001 * 120.00017 * 119.99719 * 4 2 1 6 6 C 1.37881 * 119.99556 * 299.99437 * 4 2 1 7 7 N 1.31516 * 119.99665 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00369 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.46796 * 89.99697 * 8 6 4 10 10 H 1.48493 * 109.47216 * 210.00115 * 8 6 4 11 11 H 1.48500 * 109.47112 * 329.99986 * 8 6 4 12 12 N 1.46506 * 109.46656 * 240.00112 * 2 1 3 13 13 C 1.32786 * 115.70999 * 299.74497 * 12 2 1 14 14 O 1.21226 * 118.13405 * 358.97798 * 13 12 2 15 15 C 1.50597 * 123.72487 * 178.71901 * 13 12 2 16 16 S 1.82036 * 108.32176 * 30.47786 * 15 13 12 17 17 C 1.82031 * 101.20541 * 309.41271 * 16 15 13 18 18 C 1.32789 * 115.70453 * 120.00207 * 12 2 1 19 19 O 1.21223 * 118.14047 * 1.02575 * 18 12 2 20 20 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 21 21 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 22 22 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 23 23 H 0.96996 * 120.00173 * 180.02562 * 7 6 4 24 24 H 1.09008 * 109.84343 * 270.70082 * 15 13 12 25 25 H 1.09003 * 109.62551 * 150.12988 * 15 13 12 26 26 H 1.08994 * 109.68277 * 290.70476 * 17 16 15 27 27 H 1.09002 * 109.70931 * 170.17677 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.9761 1.9950 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0182 -0.6906 -1.1963 13 6 1.6505 -1.9607 -1.3186 14 8 0.9700 -2.4459 -0.4405 15 6 2.0262 -2.8309 -2.4888 16 16 3.6400 -2.2743 -3.1211 17 6 3.3515 -0.4861 -3.3016 18 6 2.7742 0.0349 -2.0119 19 8 3.0130 1.1820 -1.7011 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.9035 -0.5280 4.4375 24 1 1.2741 -2.7416 -3.2729 25 1 2.0971 -3.8693 -2.1650 26 1 2.6498 -0.3079 -4.1163 27 1 4.2943 0.0189 -3.5121 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126228522.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:16 Heat of formation + Delta-G solvation = -61.553418 kcal Electronic energy + Delta-G solvation = -14629.145045 eV Core-core repulsion = 12092.848790 eV Total energy + Delta-G solvation = -2536.296254 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.72452 -40.02492 -36.64883 -35.19704 -33.36831 -30.67992 -30.55222 -27.30091 -24.82521 -23.52434 -20.09019 -19.38612 -18.69622 -17.89726 -17.61248 -16.90782 -16.44264 -16.09854 -15.64129 -15.15531 -14.93574 -14.59929 -14.20634 -14.00032 -13.71295 -13.35452 -13.01229 -12.70931 -12.57076 -12.05841 -11.61414 -11.52453 -11.18719 -10.87821 -10.75813 -10.52131 -8.91067 -8.36645 -6.39870 0.21953 0.35062 1.15555 1.23306 1.30068 1.39306 1.56813 2.02760 2.23943 2.68784 2.97991 3.53509 4.03492 4.04886 4.17565 4.30028 4.39597 4.47209 4.51080 4.68562 4.91061 5.28793 5.39777 6.00544 6.17680 6.55574 6.63577 6.80609 7.20135 8.80632 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.038335 B = 0.010502 C = 0.009643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.233134 B = 2665.433072 C = 2902.909838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.208 3.792 3 H 0.064 0.936 4 C -0.508 4.508 5 H 0.031 0.969 6 C 0.015 3.985 7 N -0.943 5.943 8 Si 0.946 3.054 9 H -0.260 1.260 10 H -0.290 1.290 11 H -0.251 1.251 12 N -0.551 5.551 13 C 0.507 3.493 14 O -0.497 6.497 15 C -0.098 4.098 16 S -0.206 6.206 17 C -0.095 4.095 18 C 0.515 3.485 19 O -0.535 6.535 20 H 0.046 0.954 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.268 0.732 24 H 0.169 0.831 25 H 0.158 0.842 26 H 0.171 0.829 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 -0.694 -17.885 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.105 3.895 3 H 0.082 0.918 4 C -0.547 4.547 5 H 0.049 0.951 6 C -0.183 4.183 7 N -0.583 5.583 8 Si 0.772 3.228 9 H -0.186 1.186 10 H -0.217 1.217 11 H -0.175 1.175 12 N -0.290 5.290 13 C 0.295 3.705 14 O -0.369 6.369 15 C -0.248 4.248 16 S 0.020 5.980 17 C -0.245 4.245 18 C 0.304 3.696 19 O -0.412 6.412 20 H 0.064 0.936 21 H 0.080 0.920 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.187 0.813 25 H 0.176 0.824 26 H 0.188 0.812 27 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.564 -1.023 -17.363 17.402 hybrid contribution -1.258 1.069 1.210 2.047 sum -1.822 0.046 -16.152 16.255 Atomic orbital electron populations 1.22422 0.96195 1.02997 1.00342 1.19437 0.92682 0.94758 0.82582 0.91842 1.21025 1.31416 1.11993 0.90255 0.95070 1.25700 0.97352 1.00121 0.95099 1.70013 1.47385 1.42348 0.98573 0.85900 0.79377 0.79696 0.77803 1.18616 1.21714 1.17479 1.45885 1.46139 1.13051 1.23951 1.20945 0.79574 0.81157 0.88821 1.90787 1.35413 1.70891 1.39818 1.23994 0.99495 1.03484 0.97785 1.87486 1.19764 1.05324 1.85417 1.23968 1.09502 0.95315 0.95735 1.21125 0.76535 0.85854 0.86071 1.90710 1.57098 1.19476 1.73870 0.93576 0.91967 0.91006 0.92262 0.81344 0.82420 0.81195 0.81595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.18 8.53 71.98 0.61 -6.57 15 2 C 0.21 10.23 1.96 44.24 0.09 10.32 15 3 H 0.06 3.32 5.42 -2.39 -0.01 3.30 15 4 C -0.51 -30.48 7.81 25.60 0.20 -30.28 15 5 H 0.03 2.10 7.51 -2.91 -0.02 2.08 15 6 C 0.02 0.91 5.45 84.66 0.46 1.37 15 7 N -0.94 -61.08 13.96 21.45 0.30 -60.78 15 8 Si 0.95 46.50 24.37 68.60 1.67 48.17 15 9 H -0.26 -12.04 6.87 99.48 0.68 -11.36 15 10 H -0.29 -13.98 7.11 99.48 0.71 -13.27 15 11 H -0.25 -11.64 6.53 99.48 0.65 -10.99 15 12 N -0.55 -22.01 2.47 -742.97 -1.83 -23.84 15 13 C 0.51 18.53 6.58 87.93 0.58 19.11 15 14 O -0.50 -22.87 12.90 -2.86 -0.04 -22.91 15 15 C -0.10 -2.15 6.67 71.20 0.47 -1.67 15 16 S -0.21 -4.43 22.45 -56.49 -1.27 -5.70 15 17 C -0.10 -1.90 6.67 71.20 0.47 -1.42 15 18 C 0.51 17.56 7.39 87.93 0.65 18.21 15 19 O -0.54 -22.17 15.68 -2.85 -0.04 -22.21 15 20 H 0.05 2.09 3.27 -2.39 -0.01 2.09 15 21 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 22 H 0.07 3.30 5.80 -2.38 -0.01 3.29 15 23 H 0.27 16.17 8.31 -92.71 -0.77 15.40 15 24 H 0.17 2.24 8.14 -2.38 -0.02 2.22 15 25 H 0.16 3.18 8.14 -2.39 -0.02 3.16 15 26 H 0.17 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.17 2.75 8.14 -2.39 -0.02 2.74 15 Total: -1.00 -78.80 234.41 3.45 -75.35 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 1.12 Total: 2.85 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 3.54 Total: 9.07 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -1.53 Total: -84.62 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -0.08 Total: -45.12 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.67 Total: 48.17 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -1.27 Total: -5.70 kcal Total: -78.80 3.45 -75.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126228522.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.797 kcal (2) G-P(sol) polarization free energy of solvation -78.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds