Wall clock time and date at job start Mon Mar 30 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47322 * 2 1 4 4 C 1.50699 * 109.47346 * 240.00147 * 2 1 3 5 5 H 1.08001 * 119.99938 * 240.00096 * 4 2 1 6 6 C 1.37878 * 120.00383 * 59.99594 * 4 2 1 7 7 N 1.31515 * 119.99543 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00178 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47083 * 60.00737 * 8 6 4 10 10 H 1.48502 * 109.47028 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47456 * 300.00410 * 8 6 4 12 12 N 1.46503 * 109.46958 * 120.00049 * 2 1 3 13 13 C 1.32781 * 115.71000 * 59.74651 * 12 2 1 14 14 O 1.21225 * 118.13570 * 359.23915 * 13 12 2 15 15 C 1.50586 * 123.73483 * 179.24258 * 13 12 2 16 16 S 1.82042 * 108.41203 * 30.04984 * 15 13 12 17 17 C 1.82034 * 101.20559 * 309.58653 * 16 15 13 18 18 C 1.32794 * 115.70739 * 239.99969 * 12 2 1 19 19 O 1.21231 * 118.13263 * 0.75892 * 18 12 2 20 20 H 1.08997 * 109.46547 * 60.00099 * 1 2 3 21 21 H 1.08992 * 109.46872 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46893 * 300.00087 * 1 2 3 23 23 H 0.97004 * 120.00079 * 179.97438 * 7 6 4 24 24 H 1.09002 * 109.66307 * 270.33193 * 15 13 12 25 25 H 1.09003 * 109.72293 * 149.81228 * 15 13 12 26 26 H 1.09005 * 109.67619 * 290.70615 * 17 16 15 27 27 H 1.08997 * 109.67776 * 170.16017 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5202 -4.0077 10 1 1.8270 -0.4199 -5.2204 11 1 3.8065 -1.1210 -4.0081 12 7 2.0183 -0.6906 1.1962 13 6 1.6420 -1.9576 1.3238 14 8 0.9272 -2.4307 0.4666 15 6 2.0526 -2.8403 2.4727 16 16 2.2925 -1.7950 3.9436 17 6 3.3844 -0.4977 3.2815 18 6 2.7744 0.0349 2.0119 19 8 2.9858 1.1918 1.7176 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.7095 1.1618 -3.4844 24 1 2.9847 -3.3500 2.2287 25 1 1.2724 -3.5760 2.6684 26 1 4.3670 -0.9187 3.0681 27 1 3.4799 0.3082 4.0091 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126228801.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:17 Heat of formation + Delta-G solvation = -67.759523 kcal Electronic energy + Delta-G solvation = -14571.386720 eV Core-core repulsion = 12034.821349 eV Total energy + Delta-G solvation = -2536.565371 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.61802 -39.96828 -36.54687 -35.21601 -32.87145 -30.64174 -30.05240 -27.40326 -24.74939 -23.42243 -20.09154 -19.12183 -18.59966 -17.89004 -17.37196 -16.76110 -16.38141 -15.98715 -15.63513 -15.05056 -14.83682 -14.52690 -13.79754 -13.52641 -13.45502 -13.02811 -12.87502 -12.77802 -12.53987 -12.25614 -11.98554 -11.45993 -11.14482 -10.84091 -10.45719 -10.39917 -8.90740 -8.20468 -6.32818 0.23061 0.38565 1.13798 1.36128 1.39953 1.46792 1.72905 2.03235 2.38778 2.72864 3.09478 3.57637 4.03299 4.07064 4.32887 4.42975 4.51977 4.71204 4.88686 4.95159 5.38117 5.56870 5.79017 5.97073 6.23914 6.62076 6.76634 6.86229 7.32992 8.85764 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.038954 B = 0.009662 C = 0.008972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.628069 B = 2897.113622 C = 3120.219250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.240 3.760 3 H 0.041 0.959 4 C -0.522 4.522 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.966 3.034 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.269 1.269 12 N -0.557 5.557 13 C 0.508 3.492 14 O -0.499 6.499 15 C -0.102 4.102 16 S -0.190 6.190 17 C -0.100 4.100 18 C 0.512 3.488 19 O -0.540 6.540 20 H 0.070 0.930 21 H 0.054 0.946 22 H 0.018 0.982 23 H 0.266 0.734 24 H 0.156 0.844 25 H 0.166 0.834 26 H 0.160 0.840 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.857 -7.205 12.540 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.139 3.861 3 H 0.059 0.941 4 C -0.560 4.560 5 H 0.068 0.932 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.791 3.209 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.194 1.194 12 N -0.296 5.296 13 C 0.296 3.704 14 O -0.372 6.372 15 C -0.252 4.252 16 S 0.036 5.964 17 C -0.250 4.250 18 C 0.301 3.699 19 O -0.416 6.416 20 H 0.089 0.911 21 H 0.073 0.927 22 H 0.037 0.963 23 H 0.075 0.925 24 H 0.174 0.826 25 H 0.184 0.816 26 H 0.177 0.823 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.103 -6.903 12.908 15.202 hybrid contribution 0.493 0.135 -2.253 2.311 sum 4.596 -6.767 10.655 13.433 Atomic orbital electron populations 1.22003 0.97003 1.01084 0.99926 1.18996 0.92429 0.93585 0.81049 0.94074 1.21201 1.31799 1.12029 0.91012 0.93233 1.25675 0.95254 0.95747 1.01933 1.69992 1.37251 1.23833 1.24564 0.85487 0.78737 0.78507 0.78175 1.19921 1.20282 1.19408 1.46132 1.45721 1.13364 1.24399 1.20870 0.80086 0.81386 0.88059 1.90740 1.33839 1.71277 1.41329 1.23995 1.10569 0.99557 0.91041 1.87259 1.64775 1.28003 1.16353 1.23951 1.02981 1.02616 0.95427 1.21111 0.77197 0.86157 0.85396 1.90721 1.57846 1.18867 1.74204 0.91112 0.92737 0.96287 0.92519 0.82603 0.81634 0.82262 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.52 8.82 71.98 0.64 -6.89 15 2 C 0.24 12.92 2.37 44.25 0.10 13.03 15 3 H 0.04 2.51 6.36 -2.38 -0.02 2.50 15 4 C -0.52 -29.94 7.27 25.60 0.19 -29.75 15 5 H 0.05 2.82 7.34 -2.91 -0.02 2.80 15 6 C 0.01 0.75 5.30 84.65 0.45 1.20 15 7 N -0.92 -54.57 11.32 21.45 0.24 -54.33 15 8 Si 0.97 45.17 29.54 68.60 2.03 47.20 15 9 H -0.27 -12.64 7.11 99.48 0.71 -11.93 15 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 12 N -0.56 -23.67 2.47 -742.97 -1.83 -25.50 15 13 C 0.51 19.06 6.58 87.93 0.58 19.64 15 14 O -0.50 -22.97 12.91 -2.86 -0.04 -23.00 15 15 C -0.10 -2.29 6.67 71.20 0.47 -1.82 15 16 S -0.19 -3.95 22.46 -56.49 -1.27 -5.22 15 17 C -0.10 -2.19 6.67 71.20 0.47 -1.72 15 18 C 0.51 19.00 7.39 87.93 0.65 19.65 15 19 O -0.54 -24.63 15.68 -2.88 -0.05 -24.67 15 20 H 0.07 4.09 6.07 -2.39 -0.01 4.07 15 21 H 0.05 2.89 5.69 -2.39 -0.01 2.88 15 22 H 0.02 0.90 8.14 -2.39 -0.02 0.88 15 23 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 24 H 0.16 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.17 3.09 8.14 -2.39 -0.02 3.07 15 26 H 0.16 2.51 8.14 -2.38 -0.02 2.49 15 27 H 0.17 2.98 8.14 -2.39 -0.02 2.97 15 Total: -1.00 -72.78 241.24 3.83 -68.95 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: 1.19 Total: 3.24 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 3.55 Total: 13.34 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -1.59 Total: -79.83 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -0.08 Total: -47.68 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -1.27 Total: -5.22 kcal Total: -72.78 3.83 -68.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126228801.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.191 kcal (2) G-P(sol) polarization free energy of solvation -72.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds