Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.52993 * 109.47378 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.50435 * 305.00255 * 4 3 2 6 6 C 1.53089 * 109.50811 * 184.91443 * 4 3 2 7 7 N 1.47019 * 109.25954 * 183.21576 * 6 4 3 8 8 C 1.46895 * 111.00215 * 182.39030 * 7 6 4 9 9 C 1.52999 * 109.47297 * 169.99788 * 8 7 6 10 10 C 1.50704 * 109.47337 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99937 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99920 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00632 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99920 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47323 * 60.00028 * 14 12 10 16 16 H 1.48504 * 109.47122 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46878 * 299.99917 * 14 12 10 18 18 C 1.47012 * 110.75201 * 58.61196 * 7 6 4 19 19 C 1.53098 * 109.25998 * 301.38679 * 18 7 6 20 20 O 1.43010 * 109.50914 * 65.08258 * 4 3 2 21 21 H 1.08997 * 109.47334 * 299.99788 * 1 2 3 22 22 H 1.08995 * 109.47296 * 60.00089 * 1 2 3 23 23 H 1.09000 * 109.47199 * 179.97438 * 1 2 3 24 24 H 1.00904 * 110.99913 * 123.95066 * 2 1 3 25 25 H 1.09004 * 109.47040 * 299.99934 * 3 2 1 26 26 H 1.09000 * 109.47033 * 59.99886 * 3 2 1 27 27 H 1.08996 * 109.50704 * 303.14603 * 6 4 3 28 28 H 1.09000 * 109.51191 * 63.27981 * 6 4 3 29 29 H 1.08996 * 109.47462 * 290.00156 * 8 7 6 30 30 H 1.09001 * 109.47455 * 49.99884 * 8 7 6 31 31 H 1.09004 * 109.47072 * 300.00228 * 9 8 7 32 32 H 1.08998 * 109.47003 * 60.00179 * 9 8 7 33 33 H 0.96997 * 120.00521 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.50497 * 61.32049 * 18 7 6 35 35 H 1.09001 * 109.50469 * 181.40563 * 18 7 6 36 36 H 1.09002 * 109.50604 * 176.78353 * 19 18 7 37 37 H 1.09003 * 109.50756 * 296.86703 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5248 1.3308 -0.0006 5 1 3.8733 0.7318 0.8408 6 6 4.0742 2.7543 0.1230 7 7 5.5418 2.7163 0.0443 8 6 6.1131 4.0587 0.2157 9 6 7.6306 3.9502 0.3777 10 6 8.2169 5.3274 0.5530 11 1 7.5716 6.1934 0.5496 12 6 9.5770 5.4818 0.7176 13 7 10.3630 4.4273 0.7211 14 14 10.3036 7.1889 0.9355 15 1 9.7216 7.8239 2.1450 16 1 11.7767 7.0836 1.0914 17 1 9.9904 8.0161 -0.2573 18 6 5.9800 2.1152 -1.2237 19 6 5.4115 0.6979 -1.3338 20 8 3.9866 0.7505 -1.2235 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8306 -0.5261 0.7814 25 1 1.6459 1.8948 -0.8900 26 1 1.6459 1.8948 0.8900 27 1 3.6820 3.3675 -0.6884 28 1 3.7719 3.1794 1.0801 29 1 5.8837 4.6658 -0.6599 30 1 5.6855 4.5250 1.1033 31 1 7.8601 3.3431 1.2534 32 1 8.0583 3.4840 -0.5099 33 1 11.3198 4.5359 0.8373 34 1 5.6183 2.7181 -2.0565 35 1 7.0690 2.0743 -1.2499 36 1 5.6865 0.2693 -2.2976 37 1 5.8161 0.0801 -0.5320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126431383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = -45.731908 kcal Electronic energy + Delta-G solvation = -16164.387743 eV Core-core repulsion = 13555.409541 eV Total energy + Delta-G solvation = -2608.978202 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.42730 -36.33370 -35.40226 -32.98206 -31.58474 -29.93474 -27.80652 -25.90643 -23.92654 -23.55659 -22.21730 -20.46106 -19.79796 -16.80851 -16.40758 -15.84250 -15.36130 -14.90572 -14.67382 -14.63096 -14.41000 -13.69335 -13.60266 -13.30767 -12.56119 -12.30671 -12.16224 -12.00552 -11.58579 -11.41307 -11.07025 -11.00387 -10.88164 -10.58309 -10.24655 -9.89113 -9.59066 -9.17810 -9.11141 -8.58334 -8.34655 -7.81498 -6.01133 -4.03920 3.32436 3.36869 3.39085 3.87451 3.99135 4.36704 4.51833 4.98242 5.06124 5.20170 5.26248 5.29236 5.34551 5.37639 5.45799 5.53858 5.65396 5.67985 5.74092 5.81616 6.07226 6.15479 6.24740 6.35262 6.44873 6.78154 6.91980 7.17801 7.40688 7.41362 7.50756 7.74896 7.85811 8.04858 8.40936 9.02828 9.59806 11.10189 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.061917 B = 0.004653 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.108741 B = 6016.306613 C = 6305.575858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.687 5.687 3 C 0.066 3.934 4 C 0.098 3.902 5 H 0.063 0.937 6 C 0.024 3.976 7 N -0.536 5.536 8 C 0.063 3.937 9 C 0.029 3.971 10 C -0.524 4.524 11 H 0.053 0.947 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.017 3.983 19 C 0.064 3.936 20 O -0.371 6.371 21 H 0.019 0.981 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.341 0.659 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.021 0.979 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.017 0.983 33 H 0.261 0.739 34 H 0.035 0.965 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.519 -7.353 -1.396 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.317 5.317 3 C -0.063 4.063 4 C 0.040 3.960 5 H 0.081 0.919 6 C -0.106 4.106 7 N -0.261 5.261 8 C -0.064 4.064 9 C -0.009 4.009 10 C -0.563 4.563 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.111 4.111 19 C -0.013 4.013 20 O -0.290 6.290 21 H 0.038 0.962 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.158 0.842 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.241 -7.833 -1.827 17.233 hybrid contribution 0.238 1.924 0.595 2.027 sum -15.003 -5.910 -1.232 16.172 Atomic orbital electron populations 1.22189 0.87918 1.01782 1.00256 1.60285 1.07342 1.14000 1.50112 1.21984 0.93089 0.90007 1.01241 1.22073 0.92738 0.93190 0.88047 0.91897 1.22700 0.90029 0.96405 1.01429 1.62317 1.06034 1.24417 1.33363 1.22365 0.99444 0.85643 0.98906 1.19088 0.87139 0.96955 0.97689 1.21146 0.92278 0.92818 1.50029 0.92851 1.24989 0.97230 0.96725 0.95315 1.69956 1.04358 1.28863 1.50035 0.86646 0.77959 0.84632 0.78682 1.20222 1.21241 1.20287 1.22810 1.02347 0.95331 0.90640 1.22678 0.80789 0.95985 1.01865 1.88017 1.21070 1.81797 1.38073 0.96242 0.91753 0.91471 0.84161 0.90242 0.93723 0.94567 0.90273 0.96079 0.92016 0.95704 0.96475 0.92899 0.94676 0.88596 0.88839 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.70 60.06 0.64 0.88 16 2 N -0.69 -7.46 6.81 -121.13 -0.82 -8.28 16 3 C 0.07 0.76 5.35 -3.82 -0.02 0.74 16 4 C 0.10 1.36 2.98 -26.69 -0.08 1.28 16 5 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 6 C 0.02 0.36 4.93 -3.71 -0.02 0.35 16 7 N -0.54 -10.00 4.73 -234.32 -1.11 -11.11 16 8 C 0.06 1.35 4.89 -3.83 -0.02 1.33 16 9 C 0.03 0.75 4.91 -27.88 -0.14 0.61 16 10 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 14 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.02 0.30 5.44 -3.71 -0.02 0.28 16 19 C 0.06 0.96 7.01 37.21 0.26 1.22 16 20 O -0.37 -5.79 10.42 -35.23 -0.37 -6.16 16 21 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.34 3.31 8.82 -39.29 -0.35 2.97 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 29 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.06 1.29 8.04 -51.93 -0.42 0.88 16 31 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.02 0.47 6.51 -51.93 -0.34 0.13 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.82 6.38 -51.93 -0.33 1.49 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 298.45 15.07 4.50 4.50 Total: -1.00 -30.87 298.45 -8.35 -39.23 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -6.47 Total: -1.77 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 0.20 Total: -6.92 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -1.20 Total: -45.51 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.37 Total: -6.16 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.87 -8.35 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126431383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.505 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds