Wall clock time and date at job start Mon Mar 30 2020 03:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99888 * 2 1 4 4 C 1.52993 * 109.47378 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.50435 * 305.00255 * 4 3 2 6 6 C 1.53089 * 109.50811 * 184.91443 * 4 3 2 7 7 N 1.47019 * 109.25954 * 183.21576 * 6 4 3 8 8 C 1.46895 * 111.00215 * 182.39030 * 7 6 4 9 9 C 1.52999 * 109.47297 * 169.99788 * 8 7 6 10 10 C 1.50704 * 109.47337 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99937 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99920 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00632 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99920 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47323 * 60.00028 * 14 12 10 16 16 H 1.48504 * 109.47122 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46878 * 299.99917 * 14 12 10 18 18 C 1.47012 * 110.75201 * 58.61196 * 7 6 4 19 19 C 1.53098 * 109.25998 * 301.38679 * 18 7 6 20 20 O 1.43010 * 109.50914 * 65.08258 * 4 3 2 21 21 H 1.08997 * 109.47334 * 299.99788 * 1 2 3 22 22 H 1.08995 * 109.47296 * 60.00089 * 1 2 3 23 23 H 1.09000 * 109.47199 * 179.97438 * 1 2 3 24 24 H 1.00904 * 110.99913 * 123.95066 * 2 1 3 25 25 H 1.09004 * 109.47040 * 299.99934 * 3 2 1 26 26 H 1.09000 * 109.47033 * 59.99886 * 3 2 1 27 27 H 1.08996 * 109.50704 * 303.14603 * 6 4 3 28 28 H 1.09000 * 109.51191 * 63.27981 * 6 4 3 29 29 H 1.08996 * 109.47462 * 290.00156 * 8 7 6 30 30 H 1.09001 * 109.47455 * 49.99884 * 8 7 6 31 31 H 1.09004 * 109.47072 * 300.00228 * 9 8 7 32 32 H 1.08998 * 109.47003 * 60.00179 * 9 8 7 33 33 H 0.96997 * 120.00521 * 180.02562 * 13 12 10 34 34 H 1.08999 * 109.50497 * 61.32049 * 18 7 6 35 35 H 1.09001 * 109.50469 * 181.40563 * 18 7 6 36 36 H 1.09002 * 109.50604 * 176.78353 * 19 18 7 37 37 H 1.09003 * 109.50756 * 296.86703 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5248 1.3308 -0.0006 5 1 3.8733 0.7318 0.8408 6 6 4.0742 2.7543 0.1230 7 7 5.5418 2.7163 0.0443 8 6 6.1131 4.0587 0.2157 9 6 7.6306 3.9502 0.3777 10 6 8.2169 5.3274 0.5530 11 1 7.5716 6.1934 0.5496 12 6 9.5770 5.4818 0.7176 13 7 10.3630 4.4273 0.7211 14 14 10.3036 7.1889 0.9355 15 1 9.7216 7.8239 2.1450 16 1 11.7767 7.0836 1.0914 17 1 9.9904 8.0161 -0.2573 18 6 5.9800 2.1152 -1.2237 19 6 5.4115 0.6979 -1.3338 20 8 3.9866 0.7505 -1.2235 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8306 -0.5261 0.7814 25 1 1.6459 1.8948 -0.8900 26 1 1.6459 1.8948 0.8900 27 1 3.6820 3.3675 -0.6884 28 1 3.7719 3.1794 1.0801 29 1 5.8837 4.6658 -0.6599 30 1 5.6855 4.5250 1.1033 31 1 7.8601 3.3431 1.2534 32 1 8.0583 3.4840 -0.5099 33 1 11.3198 4.5359 0.8373 34 1 5.6183 2.7181 -2.0565 35 1 7.0690 2.0743 -1.2499 36 1 5.6865 0.2693 -2.2976 37 1 5.8161 0.0801 -0.5320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126431383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:11 Heat of formation + Delta-G solvation = -69.446482 kcal Electronic energy + Delta-G solvation = -16165.416084 eV Core-core repulsion = 13555.409541 eV Total energy + Delta-G solvation = -2610.006543 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.69697 -37.53353 -36.59213 -35.04242 -32.73497 -31.79151 -29.08246 -27.33192 -25.46098 -24.77012 -23.46322 -21.95253 -21.28895 -18.64467 -17.71421 -17.17615 -16.60748 -16.42274 -16.17947 -15.86947 -15.69116 -14.88935 -14.82508 -14.59713 -14.17507 -14.08126 -13.31986 -13.16431 -12.94225 -12.83307 -12.62204 -12.55551 -12.33537 -12.16085 -11.86485 -11.59120 -11.32950 -11.23231 -10.55892 -10.50007 -9.36464 -9.30922 -8.21009 -6.32751 1.39985 1.43095 1.51070 2.39071 2.74537 2.88162 3.12298 3.31743 3.95158 3.98322 4.06926 4.12800 4.20602 4.36697 4.39780 4.52785 4.57993 4.62531 4.66408 4.68274 4.70076 4.87153 4.94764 5.01769 5.06307 5.06841 5.42287 5.61199 5.74239 5.99275 6.01250 6.12837 6.25906 6.28735 6.47238 6.83662 7.36419 8.90873 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.061917 B = 0.004653 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.108741 B = 6016.306613 C = 6305.575858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.703 5.703 3 C 0.074 3.926 4 C 0.100 3.900 5 H 0.063 0.937 6 C 0.025 3.975 7 N -0.548 5.548 8 C 0.079 3.921 9 C 0.037 3.963 10 C -0.548 4.548 11 H 0.060 0.940 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.967 3.033 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.018 3.982 19 C 0.071 3.929 20 O -0.380 6.380 21 H 0.030 0.970 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.346 0.654 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.093 0.907 29 H 0.019 0.981 30 H 0.068 0.932 31 H -0.006 1.006 32 H -0.005 1.005 33 H 0.264 0.736 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.862 -6.806 -1.199 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.334 5.334 3 C -0.056 4.056 4 C 0.042 3.958 5 H 0.081 0.919 6 C -0.104 4.104 7 N -0.273 5.273 8 C -0.048 4.048 9 C 0.000 4.000 10 C -0.586 4.586 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.791 3.209 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.110 4.110 19 C -0.006 4.006 20 O -0.298 6.298 21 H 0.048 0.952 22 H 0.080 0.920 23 H 0.096 0.904 24 H 0.165 0.835 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.111 0.889 29 H 0.037 0.963 30 H 0.086 0.914 31 H 0.012 0.988 32 H 0.013 0.987 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.614 -7.296 -1.630 18.219 hybrid contribution 0.633 1.693 0.534 1.885 sum -15.981 -5.602 -1.096 16.970 Atomic orbital electron populations 1.22222 0.86472 1.02683 1.00639 1.60263 1.08800 1.13628 1.50739 1.21888 0.91069 0.90734 1.01863 1.22168 0.94377 0.91823 0.87449 0.91896 1.22797 0.87552 0.97826 1.02217 1.62230 1.08361 1.22581 1.34137 1.22008 0.96365 0.87378 0.99060 1.18908 0.90489 0.95492 0.95146 1.21588 0.93013 0.93862 1.50137 0.92182 1.25959 0.97713 1.01206 0.94705 1.70095 1.04747 1.31416 1.50786 0.85480 0.77069 0.79189 0.79173 1.19069 1.20776 1.19233 1.22794 1.01112 0.97028 0.90083 1.22666 0.80650 0.94077 1.03161 1.88019 1.20992 1.81833 1.38993 0.95154 0.91989 0.90381 0.83550 0.90763 0.91881 0.94494 0.88877 0.96263 0.91398 0.98799 0.98673 0.92694 0.94938 0.90908 0.86634 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.70 127.69 1.37 1.79 16 2 N -0.70 -13.75 6.81 -537.15 -3.66 -17.41 16 3 C 0.07 1.53 5.35 86.30 0.46 1.99 16 4 C 0.10 2.61 2.98 30.62 0.09 2.70 16 5 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 6 C 0.02 0.73 4.93 86.31 0.43 1.15 16 7 N -0.55 -20.38 4.73 -895.25 -4.23 -24.61 16 8 C 0.08 3.41 4.89 86.30 0.42 3.84 16 9 C 0.04 2.00 4.91 29.85 0.15 2.14 16 10 C -0.55 -31.45 9.11 25.60 0.23 -31.22 16 11 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 12 C 0.00 0.14 5.46 84.65 0.46 0.60 16 13 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 14 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 C 0.02 0.64 5.44 86.31 0.47 1.11 16 19 C 0.07 2.08 7.01 72.01 0.50 2.58 16 20 O -0.38 -11.28 10.42 -148.98 -1.55 -12.83 16 21 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.35 6.02 8.82 -89.69 -0.79 5.23 16 25 H 0.07 1.62 8.14 -2.38 -0.02 1.61 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 2.47 8.09 -2.39 -0.02 2.45 16 29 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 30 H 0.07 2.81 8.04 -2.39 -0.02 2.80 16 31 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 32 H -0.01 -0.29 6.51 -2.39 -0.02 -0.30 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 2.88 6.38 -2.39 -0.02 2.87 16 36 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -65.86 298.45 -2.31 -68.17 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.23 Total: 10.37 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 4.58 Total: -13.31 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -7.60 Total: -98.69 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.55 Total: -12.83 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -65.86 -2.31 -68.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126431383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.277 kcal (2) G-P(sol) polarization free energy of solvation -65.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds