Wall clock time and date at job start Mon Mar 30 2020 03:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00171 * 2 1 4 4 C 1.53001 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.50702 * 59.90812 * 4 3 2 6 6 C 1.53093 * 109.50905 * 179.97438 * 4 3 2 7 7 N 1.47009 * 109.26071 * 176.78472 * 6 4 3 8 8 C 1.46894 * 111.00295 * 177.60644 * 7 6 4 9 9 C 1.52999 * 109.47406 * 189.68063 * 8 7 6 10 10 C 1.50701 * 109.47561 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99712 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00416 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00123 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99792 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.46998 * 89.99824 * 14 12 10 16 16 H 1.48506 * 109.46983 * 209.99552 * 14 12 10 17 17 H 1.48493 * 109.47150 * 329.99465 * 14 12 10 18 18 C 1.47016 * 110.75376 * 301.38357 * 7 6 4 19 19 C 1.53103 * 109.29298 * 58.59374 * 18 7 6 20 20 O 1.43015 * 109.50635 * 299.78476 * 4 3 2 21 21 H 1.08997 * 109.46455 * 60.00098 * 1 2 3 22 22 H 1.08990 * 109.47102 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47251 * 300.00737 * 1 2 3 24 24 H 1.00902 * 111.00430 * 236.04226 * 2 1 3 25 25 H 1.08998 * 109.47179 * 59.99558 * 3 2 1 26 26 H 1.08996 * 109.46738 * 299.99275 * 3 2 1 27 27 H 1.09001 * 109.50838 * 56.84905 * 6 4 3 28 28 H 1.09003 * 109.50551 * 296.71952 * 6 4 3 29 29 H 1.08998 * 109.47139 * 309.68167 * 8 7 6 30 30 H 1.08998 * 109.47206 * 69.68306 * 8 7 6 31 31 H 1.09002 * 109.47532 * 300.00117 * 9 8 7 32 32 H 1.09000 * 109.47250 * 59.99929 * 9 8 7 33 33 H 0.96998 * 119.99693 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.50934 * 178.55099 * 18 7 6 35 35 H 1.09003 * 109.50733 * 298.63693 * 18 7 6 36 36 H 1.08998 * 109.50917 * 63.10882 * 19 18 7 37 37 H 1.08998 * 109.50376 * 183.24332 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 0.0006 5 1 3.8754 0.8058 -0.8881 6 6 4.0745 2.7595 0.0000 7 7 5.5419 2.7147 0.0785 8 6 6.1135 4.0667 0.0232 9 6 7.6323 3.9722 -0.1359 10 6 8.2188 5.3592 -0.1932 11 1 7.5729 6.2219 -0.1227 12 6 9.5800 5.5269 -0.3346 13 7 10.0917 6.7374 -0.3851 14 14 10.6972 4.0347 -0.4558 15 1 10.8481 3.6438 -1.8803 16 1 12.0295 4.3666 0.1102 17 1 10.1024 2.9078 0.3066 18 6 5.9773 2.0077 1.2917 19 6 5.4087 0.5863 1.2805 20 8 3.9840 0.6486 1.1709 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8307 -0.5262 -0.7813 25 1 1.6459 1.8948 0.8899 26 1 1.6461 1.8947 -0.8900 27 1 3.6805 3.3014 0.8597 28 1 3.7744 3.2645 -0.9182 29 1 5.6921 4.6050 -0.8257 30 1 5.8773 4.5990 0.9445 31 1 8.0538 3.4339 0.7130 32 1 7.8687 3.4399 -1.0572 33 1 11.0494 6.8553 -0.4841 34 1 7.0662 1.9640 1.3164 35 1 5.6143 2.5381 2.1721 36 1 5.8144 0.0386 0.4299 37 1 5.6814 0.0779 2.2053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126431602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:12 Heat of formation + Delta-G solvation = -66.898386 kcal Electronic energy + Delta-G solvation = -16233.588463 eV Core-core repulsion = 13623.692414 eV Total energy + Delta-G solvation = -2609.896049 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70328 -37.57011 -36.58656 -35.00269 -32.80447 -32.14688 -29.20953 -27.42442 -25.32315 -24.75765 -23.33430 -21.85292 -21.29385 -19.06909 -17.73041 -17.18108 -16.56247 -16.40097 -16.17595 -15.78924 -15.69867 -15.01790 -14.80749 -14.61631 -14.52588 -14.23309 -13.41483 -13.21023 -12.95107 -12.89496 -12.60560 -12.40269 -12.18345 -12.01503 -11.92006 -11.66604 -11.36901 -11.28076 -10.77391 -10.51556 -9.38461 -9.33345 -8.31488 -6.36299 1.36660 1.37686 1.50226 2.35454 2.71028 2.86663 3.04051 3.31938 3.94158 3.97573 4.05714 4.11648 4.20465 4.34530 4.37674 4.50029 4.57076 4.62518 4.64375 4.67280 4.69716 4.84602 4.91543 4.97006 5.05107 5.06132 5.23339 5.42623 5.59443 5.97419 6.00174 6.07022 6.25557 6.29136 6.48247 6.71144 7.28638 8.85206 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.056233 B = 0.005084 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.805725 B = 5506.123459 C = 5800.271502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.701 5.701 3 C 0.073 3.927 4 C 0.102 3.898 5 H 0.067 0.933 6 C 0.024 3.976 7 N -0.544 5.544 8 C 0.082 3.918 9 C 0.001 3.999 10 C -0.535 4.535 11 H 0.031 0.969 12 C 0.006 3.994 13 N -0.950 5.950 14 Si 0.953 3.047 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.247 1.247 18 C 0.013 3.987 19 C 0.070 3.930 20 O -0.380 6.380 21 H 0.029 0.971 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.347 0.653 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.017 0.983 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.267 0.733 34 H 0.082 0.918 35 H 0.032 0.968 36 H 0.061 0.939 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.810 -15.545 0.451 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.332 5.332 3 C -0.057 4.057 4 C 0.043 3.957 5 H 0.084 0.916 6 C -0.105 4.105 7 N -0.269 5.269 8 C -0.045 4.045 9 C -0.037 4.037 10 C -0.573 4.573 11 H 0.050 0.950 12 C -0.191 4.191 13 N -0.591 5.591 14 Si 0.777 3.223 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.170 1.170 18 C -0.116 4.116 19 C -0.007 4.007 20 O -0.298 6.298 21 H 0.048 0.952 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.165 0.835 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.587 -15.861 0.854 22.254 hybrid contribution 0.573 1.163 -0.421 1.363 sum -15.014 -14.698 0.433 21.015 Atomic orbital electron populations 1.22222 0.86586 1.02659 1.00581 1.60246 1.08663 1.13573 1.50737 1.21906 0.91300 0.90752 1.01756 1.22155 0.94236 0.90530 0.88775 0.91551 1.22794 0.87592 0.98073 1.02033 1.62254 1.08445 1.17950 1.38280 1.21850 0.95853 0.87627 0.99172 1.19428 0.92662 0.94791 0.96782 1.21400 0.92946 0.92804 1.50200 0.95025 1.25993 0.99967 0.99133 0.93981 1.70065 1.13214 1.23792 1.52016 0.85609 0.77509 0.79774 0.79449 1.19134 1.20884 1.17033 1.22887 1.01573 0.96365 0.90742 1.22710 0.80643 0.94086 1.03290 1.88040 1.21173 1.76863 1.43753 0.95213 0.90377 0.92082 0.83513 0.90987 0.91988 0.94716 0.88943 0.91583 0.96491 0.96155 0.95983 0.92387 0.89990 0.94979 0.92111 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.70 127.69 1.37 1.77 16 2 N -0.70 -12.97 6.73 -537.17 -3.61 -16.59 16 3 C 0.07 1.42 5.38 86.30 0.46 1.88 16 4 C 0.10 2.43 3.01 30.63 0.09 2.53 16 5 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 6 C 0.02 0.66 4.93 86.31 0.43 1.08 16 7 N -0.54 -18.39 4.73 -895.23 -4.23 -22.63 16 8 C 0.08 3.36 4.89 86.30 0.42 3.78 16 9 C 0.00 0.05 3.97 29.85 0.12 0.17 16 10 C -0.54 -31.27 9.66 25.60 0.25 -31.03 16 11 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 12 C 0.01 0.37 5.47 84.65 0.46 0.83 16 13 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 14 Si 0.95 44.63 27.47 68.60 1.88 46.51 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 17 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 18 C 0.01 0.39 5.43 86.32 0.47 0.86 16 19 C 0.07 1.78 7.01 72.02 0.51 2.28 16 20 O -0.38 -10.38 10.34 -148.98 -1.54 -11.92 16 21 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 22 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.35 5.59 8.82 -89.69 -0.79 4.80 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 2.33 8.09 -2.39 -0.02 2.31 16 29 H 0.07 2.68 8.04 -2.39 -0.02 2.66 16 30 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 31 H 0.02 0.95 5.56 -2.39 -0.01 0.94 16 32 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 33 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.08 2.70 6.37 -2.39 -0.02 2.68 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.12 2.43 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -67.25 294.73 -2.45 -69.70 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.18 Total: 10.48 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 4.57 Total: -15.84 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -7.55 Total: -98.94 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.54 Total: -11.92 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -67.25 -2.45 -69.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126431602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.805 kcal (2) G-P(sol) polarization free energy of solvation -67.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds