Wall clock time and date at job start Mon Mar 30 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99885 * 2 1 4 4 C 1.52997 * 109.47187 * 66.04508 * 3 2 1 5 5 C 1.50697 * 109.47277 * 179.97438 * 4 3 2 6 6 H 1.08003 * 120.00058 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00521 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99526 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00306 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47072 * 89.99901 * 9 7 5 11 11 H 1.48501 * 109.47023 * 209.99912 * 9 7 5 12 12 H 1.48504 * 109.47105 * 329.99785 * 9 7 5 13 13 C 1.46899 * 110.99634 * 236.04615 * 2 1 3 14 14 C 1.53007 * 109.46624 * 199.77622 * 13 2 1 15 15 H 1.08993 * 109.51118 * 302.22920 * 14 13 2 16 16 C 1.53094 * 109.50400 * 182.14046 * 14 13 2 17 17 N 1.47019 * 109.25841 * 183.21595 * 16 14 13 18 18 C 1.47021 * 110.74782 * 58.61812 * 17 16 14 19 19 C 1.53095 * 109.25878 * 301.38462 * 18 17 16 20 20 O 1.43015 * 109.25985 * 56.84955 * 19 18 17 21 21 H 1.08993 * 109.47378 * 54.77333 * 1 2 3 22 22 H 1.09002 * 109.46955 * 174.77275 * 1 2 3 23 23 H 1.09007 * 109.47251 * 294.77006 * 1 2 3 24 24 H 1.09006 * 109.46816 * 306.04445 * 3 2 1 25 25 H 1.08998 * 109.46684 * 186.04751 * 3 2 1 26 26 H 1.08998 * 109.47089 * 300.00077 * 4 3 2 27 27 H 1.09006 * 109.47295 * 60.00230 * 4 3 2 28 28 H 0.96998 * 120.00207 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47423 * 319.77508 * 13 2 1 30 30 H 1.09000 * 109.47542 * 79.78444 * 13 2 1 31 31 H 1.08999 * 109.50886 * 303.15561 * 16 14 13 32 32 H 1.09000 * 109.50772 * 63.23936 * 16 14 13 33 33 H 1.00897 * 111.00012 * 182.38804 * 17 16 14 34 34 H 1.08997 * 109.50575 * 61.32237 * 18 17 16 35 35 H 1.09000 * 109.50443 * 181.40107 * 18 17 16 36 36 H 1.08995 * 109.50436 * 176.78784 * 19 18 17 37 37 H 1.09001 * 109.50225 * 296.87039 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1720 3.4642 1.3185 6 1 2.7207 3.8320 0.4641 7 6 1.9670 4.2814 2.4099 8 7 1.3001 3.8330 3.4510 9 14 2.6365 6.0252 2.4099 10 1 1.6191 6.9460 1.8421 11 1 2.9522 6.4342 3.8021 12 1 3.8704 6.0818 1.5855 13 6 1.9954 -0.7660 -1.1376 14 6 3.4455 -1.1651 -0.8564 15 1 4.0403 -0.2703 -0.6732 16 6 4.0119 -1.9173 -2.0635 17 7 5.3785 -2.3652 -1.7582 18 6 5.3890 -3.2342 -0.5723 19 6 4.8087 -2.4688 0.6198 20 8 3.4926 -2.0145 0.2933 21 1 -0.3634 0.5927 -0.8394 22 1 -0.3633 -1.0234 -0.0936 23 1 -0.3634 0.4306 0.9332 24 1 1.5611 1.9273 -0.8310 25 1 3.0797 1.3444 -0.1083 26 1 0.5472 2.0845 1.4264 27 1 2.0658 1.5016 2.1492 28 1 1.1556 4.4079 4.2187 29 1 1.3931 -1.6630 -1.2816 30 1 1.9554 -0.1531 -2.0381 31 1 3.3852 -2.7824 -2.2802 32 1 4.0301 -1.2552 -2.9292 33 1 5.7920 -2.8313 -2.5517 34 1 4.7844 -4.1204 -0.7652 35 1 6.4131 -3.5338 -0.3498 36 1 4.7618 -3.1273 1.4871 37 1 5.4441 -1.6128 0.8468 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126759769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:55 Heat of formation + Delta-G solvation = -42.221217 kcal Electronic energy + Delta-G solvation = -16405.365348 eV Core-core repulsion = 13796.539381 eV Total energy + Delta-G solvation = -2608.825967 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.38746 -36.90308 -34.47726 -33.08774 -31.76146 -29.54326 -27.69133 -25.72702 -24.95155 -23.24355 -21.68408 -20.40546 -19.67488 -16.84848 -16.37340 -16.13407 -15.15607 -14.90944 -14.52060 -14.43228 -14.28616 -14.04675 -13.52275 -13.28896 -12.47324 -12.13706 -11.97103 -11.81264 -11.47315 -11.17378 -11.08553 -10.94926 -10.80758 -10.49069 -10.26482 -9.74240 -9.47497 -9.29883 -9.04979 -8.61483 -8.27264 -7.60134 -5.93768 -3.95906 3.35494 3.41533 3.45113 3.91701 3.97509 4.43542 4.57307 4.93177 5.01973 5.15254 5.18661 5.26683 5.41975 5.46548 5.54955 5.60369 5.70442 5.83499 5.88475 6.00995 6.03517 6.19693 6.34046 6.50148 6.58545 6.70683 7.06184 7.09434 7.42839 7.61445 7.65818 7.86681 7.98440 8.16702 8.50334 9.11615 9.67234 11.17715 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.032078 B = 0.005791 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.668406 B = 4833.616297 C = 5170.727156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.534 5.534 3 C 0.062 3.938 4 C 0.029 3.971 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.063 3.937 14 C 0.100 3.900 15 H 0.070 0.930 16 C 0.026 3.974 17 N -0.688 5.688 18 C 0.020 3.980 19 C 0.060 3.940 20 O -0.359 6.359 21 H 0.017 0.983 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.018 0.982 25 H 0.059 0.941 26 H 0.017 0.983 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.342 0.658 34 H 0.036 0.964 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 -13.464 -10.288 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.257 5.257 3 C -0.065 4.065 4 C -0.009 4.009 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.066 4.066 14 C 0.041 3.959 15 H 0.088 0.912 16 C -0.104 4.104 17 N -0.319 5.319 18 C -0.110 4.110 19 C -0.018 4.018 20 O -0.277 6.277 21 H 0.036 0.964 22 H 0.073 0.927 23 H 0.096 0.904 24 H 0.036 0.964 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.160 0.840 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.008 -13.122 -9.213 16.797 hybrid contribution 0.000 0.592 -1.238 1.373 sum 5.007 -12.530 -10.451 17.067 Atomic orbital electron populations 1.22346 0.87812 1.00056 1.01525 1.61975 1.07366 1.15758 1.40625 1.22417 0.98538 0.85159 1.00373 1.19073 0.96870 0.93911 0.91032 1.21208 1.35014 0.97869 1.01876 0.92889 1.24987 0.95362 0.98391 0.95561 1.69977 1.40964 1.36300 1.06017 0.86613 0.79318 0.84977 0.77188 1.20746 1.21218 1.19910 1.22030 0.93939 0.97971 0.92698 1.22157 0.96641 0.92765 0.84367 0.91222 1.22625 0.89050 0.99477 0.99278 1.60498 1.20020 1.43718 1.07705 1.22653 1.01339 0.94547 0.92441 1.22610 0.85233 0.98188 0.95749 1.88129 1.26503 1.66535 1.46524 0.96446 0.92715 0.90443 0.96376 0.92266 0.96513 0.95647 0.93052 0.91078 0.93786 0.94408 0.89845 0.84003 0.94529 0.89963 0.88733 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.23 60.07 0.55 1.10 16 2 N -0.53 -10.35 4.60 -242.91 -1.12 -11.47 16 3 C 0.06 1.37 4.72 -3.82 -0.02 1.35 16 4 C 0.03 0.77 4.89 -27.89 -0.14 0.63 16 5 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 6 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 0.98 4.68 -3.82 -0.02 0.96 16 14 C 0.10 1.53 2.88 -26.68 -0.08 1.45 16 15 H 0.07 1.22 6.73 -51.93 -0.35 0.87 16 16 C 0.03 0.31 6.05 -3.71 -0.02 0.29 16 17 N -0.69 -7.71 6.92 -113.49 -0.79 -8.50 16 18 C 0.02 0.21 6.76 -3.71 -0.03 0.19 16 19 C 0.06 0.79 7.01 37.21 0.26 1.06 16 20 O -0.36 -6.02 10.38 -35.23 -0.37 -6.39 16 21 H 0.02 0.29 8.07 -51.93 -0.42 -0.13 16 22 H 0.05 0.83 7.85 -51.93 -0.41 0.42 16 23 H 0.08 1.51 6.73 -51.93 -0.35 1.16 16 24 H 0.02 0.39 8.07 -51.93 -0.42 -0.03 16 25 H 0.06 1.31 6.61 -51.93 -0.34 0.96 16 26 H 0.02 0.47 6.67 -51.93 -0.35 0.12 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.07 1.02 7.75 -51.93 -0.40 0.62 16 30 H 0.04 0.64 8.00 -51.93 -0.42 0.22 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.34 2.97 8.90 -39.29 -0.35 2.62 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 295.26 15.07 4.45 4.45 Total: -1.00 -32.18 295.26 -8.30 -40.48 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.30 Total: -2.06 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -1.17 Total: -46.69 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.37 Total: -6.39 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.18 -8.30 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126759769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.739 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds