Wall clock time and date at job start Mon Mar 30 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99885 * 2 1 4 4 C 1.52997 * 109.47187 * 66.04508 * 3 2 1 5 5 C 1.50697 * 109.47277 * 179.97438 * 4 3 2 6 6 H 1.08003 * 120.00058 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00521 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99526 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00306 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47072 * 89.99901 * 9 7 5 11 11 H 1.48501 * 109.47023 * 209.99912 * 9 7 5 12 12 H 1.48504 * 109.47105 * 329.99785 * 9 7 5 13 13 C 1.46899 * 110.99634 * 236.04615 * 2 1 3 14 14 C 1.53007 * 109.46624 * 199.77622 * 13 2 1 15 15 H 1.08993 * 109.51118 * 302.22920 * 14 13 2 16 16 C 1.53094 * 109.50400 * 182.14046 * 14 13 2 17 17 N 1.47019 * 109.25841 * 183.21595 * 16 14 13 18 18 C 1.47021 * 110.74782 * 58.61812 * 17 16 14 19 19 C 1.53095 * 109.25878 * 301.38462 * 18 17 16 20 20 O 1.43015 * 109.25985 * 56.84955 * 19 18 17 21 21 H 1.08993 * 109.47378 * 54.77333 * 1 2 3 22 22 H 1.09002 * 109.46955 * 174.77275 * 1 2 3 23 23 H 1.09007 * 109.47251 * 294.77006 * 1 2 3 24 24 H 1.09006 * 109.46816 * 306.04445 * 3 2 1 25 25 H 1.08998 * 109.46684 * 186.04751 * 3 2 1 26 26 H 1.08998 * 109.47089 * 300.00077 * 4 3 2 27 27 H 1.09006 * 109.47295 * 60.00230 * 4 3 2 28 28 H 0.96998 * 120.00207 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.47423 * 319.77508 * 13 2 1 30 30 H 1.09000 * 109.47542 * 79.78444 * 13 2 1 31 31 H 1.08999 * 109.50886 * 303.15561 * 16 14 13 32 32 H 1.09000 * 109.50772 * 63.23936 * 16 14 13 33 33 H 1.00897 * 111.00012 * 182.38804 * 17 16 14 34 34 H 1.08997 * 109.50575 * 61.32237 * 18 17 16 35 35 H 1.09000 * 109.50443 * 181.40107 * 18 17 16 36 36 H 1.08995 * 109.50436 * 176.78784 * 19 18 17 37 37 H 1.09001 * 109.50225 * 296.87039 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1720 3.4642 1.3185 6 1 2.7207 3.8320 0.4641 7 6 1.9670 4.2814 2.4099 8 7 1.3001 3.8330 3.4510 9 14 2.6365 6.0252 2.4099 10 1 1.6191 6.9460 1.8421 11 1 2.9522 6.4342 3.8021 12 1 3.8704 6.0818 1.5855 13 6 1.9954 -0.7660 -1.1376 14 6 3.4455 -1.1651 -0.8564 15 1 4.0403 -0.2703 -0.6732 16 6 4.0119 -1.9173 -2.0635 17 7 5.3785 -2.3652 -1.7582 18 6 5.3890 -3.2342 -0.5723 19 6 4.8087 -2.4688 0.6198 20 8 3.4926 -2.0145 0.2933 21 1 -0.3634 0.5927 -0.8394 22 1 -0.3633 -1.0234 -0.0936 23 1 -0.3634 0.4306 0.9332 24 1 1.5611 1.9273 -0.8310 25 1 3.0797 1.3444 -0.1083 26 1 0.5472 2.0845 1.4264 27 1 2.0658 1.5016 2.1492 28 1 1.1556 4.4079 4.2187 29 1 1.3931 -1.6630 -1.2816 30 1 1.9554 -0.1531 -2.0381 31 1 3.3852 -2.7824 -2.2802 32 1 4.0301 -1.2552 -2.9292 33 1 5.7920 -2.8313 -2.5517 34 1 4.7844 -4.1204 -0.7652 35 1 6.4131 -3.5338 -0.3498 36 1 4.7618 -3.1273 1.4871 37 1 5.4441 -1.6128 0.8468 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126759769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:55 Heat of formation + Delta-G solvation = -67.596061 kcal Electronic energy + Delta-G solvation = -16406.465684 eV Core-core repulsion = 13796.539381 eV Total energy + Delta-G solvation = -2609.926303 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50067 -38.40485 -35.50622 -35.19158 -33.06393 -31.44372 -28.84974 -27.35735 -26.41609 -24.62744 -23.22095 -21.66827 -21.18241 -18.59176 -17.75257 -17.36815 -16.68069 -16.41470 -16.01061 -15.66665 -15.58925 -15.26280 -14.73612 -14.72513 -14.12940 -14.04536 -13.34162 -13.15360 -12.94804 -12.83488 -12.58438 -12.41908 -12.28604 -12.16018 -11.80042 -11.46584 -11.24754 -11.19063 -10.58208 -10.52964 -9.48833 -9.11357 -8.19298 -6.31114 1.39810 1.42075 1.53178 2.40671 2.82961 2.98838 3.13779 3.28637 3.91301 4.01239 4.07266 4.13517 4.28202 4.33166 4.39456 4.52642 4.54946 4.60173 4.68127 4.71274 4.80188 4.84873 4.98482 5.01588 5.06277 5.14909 5.45949 5.66171 5.79429 5.82803 6.10942 6.24226 6.35220 6.38916 6.43804 6.86147 7.37925 8.93155 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.032078 B = 0.005791 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.668406 B = 4833.616297 C = 5170.727156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.554 5.554 3 C 0.081 3.919 4 C 0.037 3.963 5 C -0.545 4.545 6 H 0.059 0.941 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.263 1.263 13 C 0.065 3.935 14 C 0.097 3.903 15 H 0.040 0.960 16 C 0.035 3.965 17 N -0.699 5.699 18 C 0.027 3.973 19 C 0.051 3.949 20 O -0.389 6.389 21 H 0.028 0.972 22 H 0.083 0.917 23 H 0.047 0.953 24 H 0.024 0.976 25 H 0.055 0.945 26 H -0.005 1.005 27 H -0.014 1.014 28 H 0.264 0.736 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.360 0.640 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.706 -13.801 -12.075 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.278 5.278 3 C -0.046 4.046 4 C 0.000 4.000 5 C -0.584 4.584 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.187 1.187 13 C -0.064 4.064 14 C 0.038 3.962 15 H 0.058 0.942 16 C -0.095 4.095 17 N -0.332 5.332 18 C -0.102 4.102 19 C -0.026 4.026 20 O -0.307 6.307 21 H 0.046 0.954 22 H 0.102 0.898 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.014 0.986 27 H 0.004 0.996 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.180 0.820 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.799 -13.483 -11.029 18.359 hybrid contribution -0.252 0.632 -0.636 0.931 sum 5.547 -12.851 -11.665 18.220 Atomic orbital electron populations 1.22318 0.86879 1.01828 1.00404 1.61852 1.08424 1.14151 1.43356 1.22005 0.98385 0.86742 0.97478 1.18891 0.95019 0.93639 0.92452 1.21627 1.35378 0.98929 1.02420 0.92227 1.25987 0.95398 1.03375 0.94937 1.70122 1.42080 1.38258 1.06794 0.85412 0.79036 0.78853 0.77521 1.19523 1.20676 1.18739 1.22128 0.94269 0.98218 0.91737 1.22166 0.96193 0.92168 0.85654 0.94246 1.22492 0.89522 0.99752 0.97761 1.60448 1.19719 1.44446 1.08626 1.22589 1.02516 0.94025 0.91093 1.22811 0.83897 0.98117 0.97816 1.88072 1.28432 1.66773 1.47469 0.95356 0.89803 0.93387 0.95816 0.92624 0.98636 0.99567 0.92746 0.89152 0.92036 0.93233 0.88360 0.82028 0.93694 0.87768 0.87370 0.94156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.18 9.23 127.69 1.18 2.35 16 2 N -0.55 -21.49 4.60 -922.43 -4.24 -25.73 16 3 C 0.08 3.66 4.72 86.30 0.41 4.07 16 4 C 0.04 2.11 4.89 29.85 0.15 2.26 16 5 C -0.55 -32.31 9.11 25.60 0.23 -32.08 16 6 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 7 C 0.00 0.05 5.46 84.65 0.46 0.51 16 8 N -0.93 -58.67 13.29 21.45 0.28 -58.39 16 9 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 13 C 0.06 1.92 4.68 86.31 0.40 2.33 16 14 C 0.10 2.91 2.88 30.63 0.09 2.99 16 15 H 0.04 1.40 6.73 -2.39 -0.02 1.39 16 16 C 0.03 0.75 6.05 86.31 0.52 1.27 16 17 N -0.70 -14.03 6.92 -512.98 -3.55 -17.58 16 18 C 0.03 0.52 6.76 86.31 0.58 1.11 16 19 C 0.05 1.32 7.01 72.01 0.50 1.83 16 20 O -0.39 -12.95 10.38 -148.98 -1.55 -14.50 16 21 H 0.03 0.91 8.07 -2.39 -0.02 0.89 16 22 H 0.08 2.40 7.85 -2.39 -0.02 2.39 16 23 H 0.05 1.93 6.73 -2.38 -0.02 1.92 16 24 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 25 H 0.06 2.52 6.61 -2.39 -0.02 2.50 16 26 H 0.00 -0.28 6.67 -2.39 -0.02 -0.30 16 27 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 28 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.09 2.35 7.75 -2.39 -0.02 2.33 16 30 H 0.06 1.63 8.00 -2.39 -0.02 1.61 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.36 5.15 8.90 -89.70 -0.80 4.36 16 34 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.67 295.26 -2.26 -72.93 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.23 Total: 9.27 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 4.53 Total: -13.36 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -7.51 Total: -101.70 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.55 Total: -14.50 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.67 -2.26 -72.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126759769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.334 kcal (2) G-P(sol) polarization free energy of solvation -70.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds