Wall clock time and date at job start Mon Mar 30 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 C 1.50701 * 109.47212 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 14 14 C 1.53000 * 109.47251 * 293.95304 * 13 2 1 15 15 H 1.08994 * 109.50625 * 60.09042 * 14 13 2 16 16 C 1.53102 * 109.50293 * 180.22054 * 14 13 2 17 17 N 1.47023 * 109.25355 * 176.78438 * 16 14 13 18 18 C 1.47013 * 110.75283 * 301.38464 * 17 16 14 19 19 C 1.53094 * 109.25826 * 58.61770 * 18 17 16 20 20 O 1.43010 * 109.50850 * 300.00181 * 14 13 2 21 21 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 22 22 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 24 24 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 25 25 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 26 26 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 27 27 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 28 28 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47144 * 53.95829 * 13 2 1 30 30 H 1.09002 * 109.46776 * 173.95798 * 13 2 1 31 31 H 1.09002 * 109.50763 * 296.71272 * 16 14 13 32 32 H 1.08994 * 109.50773 * 56.85182 * 16 14 13 33 33 H 1.00898 * 110.99616 * 177.60561 * 17 16 14 34 34 H 1.08998 * 109.50406 * 298.68193 * 18 17 16 35 35 H 1.08998 * 109.50269 * 178.55205 * 18 17 16 36 36 H 1.09007 * 109.50595 * 183.21981 * 19 18 17 37 37 H 1.08998 * 109.50879 * 63.08533 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1721 3.4642 1.3184 6 1 2.7201 3.8322 0.4636 7 6 1.9662 4.2817 2.4094 8 7 2.4376 5.5094 2.4093 9 14 1.0178 3.6453 3.8876 10 1 1.9609 3.0182 4.8482 11 1 0.3159 4.7745 4.5488 12 1 0.0230 2.6373 3.4409 13 6 1.9953 -0.7660 -1.1376 14 6 1.6313 -2.2427 -0.9702 15 1 0.5471 -2.3484 -0.9337 16 6 2.1843 -3.0426 -2.1527 17 7 1.8987 -4.4702 -1.9482 18 6 2.4976 -4.9468 -0.6931 19 6 1.9415 -4.1277 0.4747 20 8 2.2009 -2.7404 0.2435 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.5611 1.9273 -0.8309 25 1 3.0797 1.3443 -0.1084 26 1 2.0658 1.5016 2.1492 27 1 0.5472 2.0845 1.4264 28 1 2.2931 6.0844 3.1771 29 1 1.5610 -0.3873 -2.0627 30 1 3.0796 -0.6612 -1.1756 31 1 1.7100 -2.7049 -3.0742 32 1 3.2618 -2.8932 -2.2212 33 1 2.2181 -5.0188 -2.7325 34 1 3.5802 -4.8278 -0.7383 35 1 2.2522 -5.9990 -0.5492 36 1 2.4253 -4.4390 1.4006 37 1 0.8664 -4.2889 0.5529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126759989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:56 Heat of formation + Delta-G solvation = -38.281851 kcal Electronic energy + Delta-G solvation = -16313.328776 eV Core-core repulsion = 13704.673633 eV Total energy + Delta-G solvation = -2608.655143 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56778 -37.05298 -34.62901 -33.15460 -31.89078 -29.90743 -27.64976 -26.34060 -25.08379 -23.31883 -21.47432 -20.35136 -19.78101 -16.91620 -16.82293 -16.41151 -15.38514 -15.02876 -14.68945 -14.45338 -14.31037 -14.12512 -13.63632 -13.26226 -12.74928 -12.47407 -12.26343 -11.90161 -11.57560 -11.34567 -11.19648 -11.10058 -10.85278 -10.47383 -10.05015 -9.68949 -9.68169 -9.57676 -9.14189 -8.76182 -8.47461 -7.73938 -5.99554 -3.97138 3.37730 3.44010 3.49907 3.75543 3.83621 4.38016 4.51559 4.79116 4.88534 5.00187 5.01207 5.11360 5.31247 5.35389 5.45393 5.47833 5.61148 5.66017 5.74141 5.85342 5.90466 6.05641 6.20860 6.36953 6.42929 6.56512 6.83969 6.95806 7.21326 7.27627 7.40527 7.67593 7.70319 7.91505 8.58471 9.04658 9.63467 11.13906 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.048813 B = 0.005242 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.479443 B = 5339.838613 C = 5579.144407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.535 5.535 3 C 0.071 3.929 4 C -0.007 4.007 5 C -0.520 4.520 6 H 0.070 0.930 7 C 0.067 3.933 8 N -0.906 5.906 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.062 3.938 14 C 0.098 3.902 15 H 0.065 0.935 16 C 0.024 3.976 17 N -0.689 5.689 18 C 0.018 3.982 19 C 0.060 3.940 20 O -0.357 6.357 21 H 0.019 0.981 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.025 0.975 25 H 0.066 0.934 26 H 0.021 0.979 27 H 0.016 0.984 28 H 0.262 0.738 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.344 0.656 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 -20.361 -8.193 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.259 5.259 3 C -0.055 4.055 4 C -0.045 4.045 5 C -0.559 4.559 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.545 5.545 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.190 1.190 13 C -0.067 4.067 14 C 0.040 3.960 15 H 0.083 0.917 16 C -0.106 4.106 17 N -0.321 5.321 18 C -0.111 4.111 19 C -0.018 4.018 20 O -0.275 6.275 21 H 0.038 0.962 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.161 0.839 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.432 -20.185 -7.244 21.583 hybrid contribution 0.108 -0.075 -0.413 0.434 sum -2.324 -20.260 -7.657 21.783 Atomic orbital electron populations 1.22427 0.88319 1.00643 1.01080 1.61995 1.07284 1.15649 1.40946 1.22147 0.99071 0.84896 0.99415 1.19565 0.96529 0.95478 0.92930 1.21103 1.35379 0.95595 1.03773 0.91185 1.24991 0.95329 0.94670 0.98397 1.69920 1.46462 1.07216 1.30882 0.86740 0.80805 0.78473 0.83048 1.20219 1.21563 1.18967 1.22062 1.01118 0.90887 0.92645 1.22191 0.97307 0.92945 0.83603 0.91731 1.22631 0.99586 0.88677 0.99710 1.60530 1.62887 1.03603 1.05043 1.22650 0.97291 0.99887 0.91293 1.22621 1.00171 0.82142 0.96849 1.88197 1.76086 1.22963 1.40219 0.96216 0.92436 0.90745 0.95680 0.91569 0.96055 0.96611 0.92791 0.93807 0.90300 0.89773 0.93998 0.83861 0.94245 0.89936 0.88630 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.12 60.07 0.55 0.94 16 2 N -0.53 -9.81 4.63 -242.93 -1.12 -10.93 16 3 C 0.07 1.51 4.90 -3.83 -0.02 1.49 16 4 C -0.01 -0.18 3.97 -27.88 -0.11 -0.29 16 5 C -0.52 -15.23 9.66 -34.44 -0.33 -15.57 16 6 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 9 Si 0.88 22.46 27.47 -169.99 -4.67 17.79 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 13 C 0.06 0.92 4.65 -3.83 -0.02 0.90 16 14 C 0.10 1.31 2.68 -26.68 -0.07 1.24 16 15 H 0.06 0.88 6.48 -51.93 -0.34 0.55 16 16 C 0.02 0.25 6.05 -3.70 -0.02 0.23 16 17 N -0.69 -6.63 6.92 -113.49 -0.79 -7.41 16 18 C 0.02 0.17 6.76 -3.71 -0.03 0.15 16 19 C 0.06 0.68 7.01 37.21 0.26 0.94 16 20 O -0.36 -5.39 10.33 -35.23 -0.36 -5.75 16 21 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 22 H 0.06 0.84 6.30 -51.93 -0.33 0.51 16 23 H 0.07 1.34 6.47 -51.93 -0.34 1.01 16 24 H 0.02 0.53 8.12 -51.93 -0.42 0.10 16 25 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 26 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 27 H 0.02 0.39 5.61 -51.93 -0.29 0.10 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.34 2.54 8.90 -39.29 -0.35 2.19 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 291.07 15.07 4.39 4.39 Total: -1.00 -32.52 291.07 -7.92 -40.44 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.25 Total: -2.76 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 0.11 Total: -8.07 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -1.14 Total: -46.03 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.36 Total: -5.75 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.67 Total: 17.79 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.52 -7.92 -40.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126759989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.155 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds