Wall clock time and date at job start Mon Mar 30 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 C 1.50701 * 109.47212 * 179.97438 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 14 14 C 1.53000 * 109.47251 * 293.95304 * 13 2 1 15 15 H 1.08994 * 109.50625 * 60.09042 * 14 13 2 16 16 C 1.53102 * 109.50293 * 180.22054 * 14 13 2 17 17 N 1.47023 * 109.25355 * 176.78438 * 16 14 13 18 18 C 1.47013 * 110.75283 * 301.38464 * 17 16 14 19 19 C 1.53094 * 109.25826 * 58.61770 * 18 17 16 20 20 O 1.43010 * 109.50850 * 300.00181 * 14 13 2 21 21 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 22 22 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 24 24 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 25 25 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 26 26 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 27 27 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 28 28 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47144 * 53.95829 * 13 2 1 30 30 H 1.09002 * 109.46776 * 173.95798 * 13 2 1 31 31 H 1.09002 * 109.50763 * 296.71272 * 16 14 13 32 32 H 1.08994 * 109.50773 * 56.85182 * 16 14 13 33 33 H 1.00898 * 110.99616 * 177.60561 * 17 16 14 34 34 H 1.08998 * 109.50406 * 298.68193 * 18 17 16 35 35 H 1.08998 * 109.50269 * 178.55205 * 18 17 16 36 36 H 1.09007 * 109.50595 * 183.21981 * 19 18 17 37 37 H 1.08998 * 109.50879 * 63.08533 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1721 3.4642 1.3184 6 1 2.7201 3.8322 0.4636 7 6 1.9662 4.2817 2.4094 8 7 2.4376 5.5094 2.4093 9 14 1.0178 3.6453 3.8876 10 1 1.9609 3.0182 4.8482 11 1 0.3159 4.7745 4.5488 12 1 0.0230 2.6373 3.4409 13 6 1.9953 -0.7660 -1.1376 14 6 1.6313 -2.2427 -0.9702 15 1 0.5471 -2.3484 -0.9337 16 6 2.1843 -3.0426 -2.1527 17 7 1.8987 -4.4702 -1.9482 18 6 2.4976 -4.9468 -0.6931 19 6 1.9415 -4.1277 0.4747 20 8 2.2009 -2.7404 0.2435 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.5611 1.9273 -0.8309 25 1 3.0797 1.3443 -0.1084 26 1 2.0658 1.5016 2.1492 27 1 0.5472 2.0845 1.4264 28 1 2.2931 6.0844 3.1771 29 1 1.5610 -0.3873 -2.0627 30 1 3.0796 -0.6612 -1.1756 31 1 1.7100 -2.7049 -3.0742 32 1 3.2618 -2.8932 -2.2212 33 1 2.2181 -5.0188 -2.7325 34 1 3.5802 -4.8278 -0.7383 35 1 2.2522 -5.9990 -0.5492 36 1 2.4253 -4.4390 1.4006 37 1 0.8664 -4.2889 0.5529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126759989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:56 Heat of formation + Delta-G solvation = -64.326591 kcal Electronic energy + Delta-G solvation = -16314.458161 eV Core-core repulsion = 13704.673633 eV Total energy + Delta-G solvation = -2609.784528 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.53704 -38.44704 -35.52311 -35.17114 -33.28917 -31.59366 -28.71525 -27.82139 -26.37077 -24.64540 -22.79953 -21.53074 -21.28227 -19.01327 -17.74024 -17.43768 -16.75407 -16.27714 -15.96254 -15.88186 -15.51871 -15.29937 -14.80652 -14.70251 -14.37703 -14.30367 -13.42632 -13.17203 -12.99654 -12.75688 -12.62200 -12.40882 -12.10622 -11.93840 -11.79907 -11.64313 -11.34689 -11.19049 -10.75667 -10.58443 -9.52286 -9.15901 -8.30034 -6.33846 1.36953 1.37626 1.50826 2.36765 2.79770 2.94286 3.05674 3.26339 3.90873 4.00121 4.04728 4.11856 4.25930 4.30599 4.40964 4.45753 4.51744 4.59764 4.66804 4.72345 4.74902 4.84910 4.94913 4.98698 5.02157 5.10046 5.29871 5.47859 5.62701 5.80303 6.13545 6.18509 6.30676 6.35281 6.42465 6.73500 7.30964 8.86685 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.048813 B = 0.005242 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.479443 B = 5339.838613 C = 5579.144407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.083 3.917 4 C 0.000 4.000 5 C -0.533 4.533 6 H 0.033 0.967 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.250 1.250 13 C 0.062 3.938 14 C 0.101 3.899 15 H 0.063 0.937 16 C 0.030 3.970 17 N -0.692 5.692 18 C 0.022 3.978 19 C 0.053 3.947 20 O -0.390 6.390 21 H 0.029 0.971 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.023 0.977 25 H 0.058 0.942 26 H 0.015 0.985 27 H 0.020 0.980 28 H 0.267 0.733 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.039 0.961 33 H 0.358 0.642 34 H 0.036 0.964 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.153 -22.688 -8.279 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.044 4.044 4 C -0.037 4.037 5 C -0.571 4.571 6 H 0.052 0.948 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.173 1.173 13 C -0.067 4.067 14 C 0.043 3.957 15 H 0.081 0.919 16 C -0.100 4.100 17 N -0.325 5.325 18 C -0.107 4.107 19 C -0.024 4.024 20 O -0.309 6.309 21 H 0.048 0.952 22 H 0.097 0.903 23 H 0.076 0.924 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.178 0.822 34 H 0.055 0.945 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.492 -22.545 -7.358 23.971 hybrid contribution 0.482 0.644 -0.445 0.919 sum -3.010 -21.902 -7.803 23.444 Atomic orbital electron populations 1.22427 0.87207 1.01927 1.00694 1.61898 1.08413 1.13691 1.43225 1.21829 0.98746 0.86650 0.97179 1.19430 0.96299 0.93161 0.94856 1.21419 1.35094 0.97866 1.02754 0.94820 1.25943 0.96391 0.94747 1.01794 1.70059 1.48065 1.08733 1.32204 0.85642 0.79664 0.78374 0.78857 1.19383 1.20645 1.17336 1.22138 1.00747 0.91687 0.92093 1.22148 0.97156 0.92075 0.84355 0.91944 1.22530 0.99362 0.89116 0.99030 1.60510 1.63060 1.03193 1.05773 1.22630 0.96923 1.00716 0.90444 1.22823 1.00461 0.80828 0.98321 1.88141 1.76571 1.25083 1.41135 0.95239 0.90316 0.92412 0.95924 0.92320 0.96654 0.96146 0.92409 0.92018 0.90926 0.88119 0.94316 0.82197 0.94549 0.87615 0.87646 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.12 127.69 1.17 1.96 16 2 N -0.55 -19.47 4.63 -922.48 -4.27 -23.74 16 3 C 0.08 3.53 4.90 86.30 0.42 3.95 16 4 C 0.00 0.02 3.97 29.85 0.12 0.13 16 5 C -0.53 -31.88 9.66 25.60 0.25 -31.63 16 6 H 0.03 2.19 7.99 -2.91 -0.02 2.16 16 7 C 0.01 0.49 5.47 84.66 0.46 0.96 16 8 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 9 Si 0.95 46.09 27.47 68.60 1.88 47.97 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 13 C 0.06 1.74 4.65 86.30 0.40 2.14 16 14 C 0.10 2.50 2.68 30.63 0.08 2.58 16 15 H 0.06 1.56 6.48 -2.39 -0.02 1.54 16 16 C 0.03 0.56 6.05 86.31 0.52 1.08 16 17 N -0.69 -11.36 6.92 -512.98 -3.55 -14.91 16 18 C 0.02 0.36 6.76 86.31 0.58 0.94 16 19 C 0.05 1.09 7.01 72.01 0.50 1.60 16 20 O -0.39 -11.24 10.33 -148.98 -1.54 -12.78 16 21 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.08 2.13 6.30 -2.39 -0.02 2.11 16 23 H 0.06 1.99 6.47 -2.39 -0.02 1.98 16 24 H 0.02 0.95 8.12 -2.39 -0.02 0.93 16 25 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 26 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 27 H 0.02 1.00 5.61 -2.39 -0.01 0.98 16 28 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 29 H 0.06 1.52 8.12 -2.39 -0.02 1.50 16 30 H 0.07 2.12 7.93 -2.39 -0.02 2.10 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.36 4.20 8.90 -89.70 -0.80 3.40 16 34 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -69.91 291.07 -2.49 -72.39 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.18 Total: 7.86 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.51 Total: -16.28 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -7.52 Total: -99.16 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -1.54 Total: -12.78 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.97 kcal Total: -69.91 -2.49 -72.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126759989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.065 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds