Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29465 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48507 * 109.46690 * 239.99768 * 3 2 1 5 5 H 1.48499 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47140 * 119.99826 * 3 2 1 7 7 C 1.46643 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99685 * 195.31408 * 7 2 1 9 9 C 1.39718 * 120.00281 * 15.59164 * 7 2 1 10 10 C 1.41552 * 120.29148 * 24.48832 * 9 7 2 11 11 C 1.36022 * 119.87538 * 179.97438 * 10 9 7 12 12 C 1.39499 * 120.49118 * 359.97438 * 11 10 9 13 13 F 1.35102 * 119.69809 * 180.02562 * 12 11 10 14 14 C 1.38902 * 120.60770 * 0.02562 * 12 11 10 15 15 N 1.48012 * 119.95012 * 180.02562 * 14 12 11 16 16 O 1.31704 * 119.99839 * 90.00124 * 15 14 12 17 17 O 1.31694 * 120.00054 * 269.99957 * 15 14 12 18 18 C 1.37768 * 120.10228 * 359.74044 * 14 12 11 19 19 F 1.35100 * 120.24361 * 180.25316 * 18 14 12 20 20 H 0.96998 * 120.00153 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.06597 * 359.97438 * 10 9 7 22 22 H 1.08001 * 119.75559 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2286 1.6178 0.0000 4 1 3.0824 1.6963 -1.2126 5 1 1.2636 2.7464 -0.0006 6 1 3.0823 1.6965 1.2125 7 6 2.0278 -1.2700 0.0006 8 1 3.0791 -1.2864 0.2476 9 6 1.3678 -2.4579 -0.3241 10 6 0.2029 -2.4307 -1.1278 11 6 -0.4326 -3.5924 -1.4392 12 6 0.0552 -4.8132 -0.9726 13 9 -0.5884 -5.9573 -1.2920 14 6 1.1966 -4.8633 -0.1826 15 7 1.7017 -6.1666 0.3041 16 8 2.5701 -6.8466 -0.4157 17 8 1.2829 -6.6463 1.4568 18 6 1.8625 -3.7023 0.1438 19 9 2.9758 -3.7482 0.9077 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1806 -1.4895 -1.4931 22 1 -1.3211 -3.5695 -2.0529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000146485859.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -57.132381 kcal Electronic energy + Delta-G solvation = -15415.735667 eV Core-core repulsion = 12189.957642 eV Total energy + Delta-G solvation = -3225.778025 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.034 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.16086 -47.99763 -38.63953 -37.37313 -34.33442 -33.80500 -30.92837 -30.23104 -25.94437 -25.43685 -21.74074 -21.66620 -18.76378 -17.70814 -17.39501 -16.77777 -16.72879 -15.71083 -15.05332 -14.79499 -14.46449 -14.45891 -13.98069 -13.52853 -12.70921 -12.37149 -11.79906 -11.47993 -11.36737 -11.21281 -10.95802 -10.82409 -10.59156 -10.35457 -10.14522 -9.90085 -8.63007 -8.16925 -7.64446 -5.07574 0.35506 1.59741 1.74374 1.91848 2.65216 2.68207 2.70305 3.36270 3.68088 4.57644 4.64586 5.30556 5.46432 5.80257 5.89926 6.13397 6.19987 6.53704 6.68123 7.05054 7.12156 7.22538 7.24146 7.67185 7.79285 8.00775 9.22345 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.038951 B = 0.008891 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.673740 B = 3148.587173 C = 3659.707717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.071 3.929 3 Si 0.934 3.066 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.409 4.409 8 H 0.101 0.899 9 C 0.084 3.916 10 C -0.118 4.118 11 C -0.105 4.105 12 C -0.017 4.017 13 F -0.151 7.151 14 C 0.007 3.993 15 N -0.021 5.021 16 O -0.155 6.155 17 O -0.152 6.152 18 C 0.000 4.000 19 F -0.140 7.140 20 H 0.304 0.696 21 H 0.148 0.852 22 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 4.177 -2.141 4.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.159 4.159 3 Si 0.755 3.245 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.433 4.433 8 H 0.119 0.881 9 C 0.079 3.921 10 C -0.137 4.137 11 C -0.124 4.124 12 C -0.038 4.038 13 F -0.130 7.130 14 C -0.076 4.076 15 N 0.475 4.525 16 O -0.359 6.359 17 O -0.358 6.358 18 C -0.022 4.022 19 F -0.119 7.119 20 H 0.117 0.883 21 H 0.165 0.835 22 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.078 4.954 -2.358 5.592 hybrid contribution 0.437 -0.065 0.323 0.547 sum -0.641 4.889 -2.035 5.335 Atomic orbital electron populations 1.69009 1.09065 1.32413 1.24782 1.27679 0.94818 1.02720 0.90732 0.85900 0.80219 0.77070 0.81297 1.17616 1.19339 1.17800 1.20857 0.97750 0.89111 1.35631 0.88074 1.17438 0.93121 0.89520 0.91987 1.21109 0.96774 0.97562 0.98293 1.20389 1.00680 0.89888 1.01492 1.16425 0.94969 0.83074 1.09341 1.91393 1.80981 1.48505 1.92170 1.20107 1.00346 0.78880 1.08302 1.50416 0.98362 1.02934 1.00783 1.96210 1.25878 1.59535 1.54325 1.96215 1.60887 1.73602 1.05085 1.17000 0.90274 0.91172 1.03708 1.91382 1.49783 1.97010 1.73696 0.88320 0.83503 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -14.66 10.95 55.99 0.61 -14.05 14 2 C 0.07 1.40 5.35 -15.16 -0.08 1.32 14 3 Si 0.93 14.67 29.67 -169.99 -5.04 9.63 14 4 H -0.25 -3.96 7.11 56.52 0.40 -3.55 14 5 H -0.27 -4.02 7.11 56.52 0.40 -3.62 14 6 H -0.25 -4.07 7.11 56.52 0.40 -3.67 14 7 C -0.41 -9.16 9.04 -35.64 -0.32 -9.48 14 8 H 0.10 2.22 7.80 -52.49 -0.41 1.81 14 9 C 0.08 1.97 5.62 -106.70 -0.60 1.37 14 10 C -0.12 -2.54 8.71 -39.11 -0.34 -2.88 14 11 C -0.10 -2.15 9.95 -39.91 -0.40 -2.55 14 12 C -0.02 -0.38 7.33 -38.87 -0.28 -0.67 14 13 F -0.15 -3.44 17.08 2.25 0.04 -3.40 14 14 C 0.01 0.17 6.28 -79.88 -0.50 -0.34 14 15 N -0.02 -0.52 4.53 34.00 0.15 -0.36 14 16 O -0.15 -3.75 19.97 -31.57 -0.63 -4.38 14 17 O -0.15 -3.73 19.97 -31.56 -0.63 -4.36 14 18 C 0.00 0.00 7.33 -38.37 -0.28 -0.28 14 19 F -0.14 -3.48 16.56 2.25 0.04 -3.44 14 20 H 0.30 5.27 8.27 -40.82 -0.34 4.94 14 21 H 0.15 3.01 6.10 -52.49 -0.32 2.69 14 22 H 0.13 2.22 8.06 -52.49 -0.42 1.80 14 LS Contribution 229.87 15.07 3.46 3.46 Total: -1.00 -24.94 229.87 -5.09 -30.03 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -0.29 Total: 0.39 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -2.81 Total: -13.51 kcal Atomic # 7 Polarization: -15.18 SS G_CDS: 0.77 Total: -14.41 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -1.26 Total: -8.75 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.08 Total: -6.84 kcal Atomic # 14 Polarization: 14.67 SS G_CDS: -5.04 Total: 9.63 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -24.94 -5.09 -30.03 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146485859.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.100 kcal (2) G-P(sol) polarization free energy of solvation -24.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds