Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29465 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48507 * 109.46690 * 239.99768 * 3 2 1 5 5 H 1.48499 * 109.47069 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47140 * 119.99826 * 3 2 1 7 7 C 1.46643 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99685 * 195.31408 * 7 2 1 9 9 C 1.39718 * 120.00281 * 15.59164 * 7 2 1 10 10 C 1.41552 * 120.29148 * 24.48832 * 9 7 2 11 11 C 1.36022 * 119.87538 * 179.97438 * 10 9 7 12 12 C 1.39499 * 120.49118 * 359.97438 * 11 10 9 13 13 F 1.35102 * 119.69809 * 180.02562 * 12 11 10 14 14 C 1.38902 * 120.60770 * 0.02562 * 12 11 10 15 15 N 1.48012 * 119.95012 * 180.02562 * 14 12 11 16 16 O 1.31704 * 119.99839 * 90.00124 * 15 14 12 17 17 O 1.31694 * 120.00054 * 269.99957 * 15 14 12 18 18 C 1.37768 * 120.10228 * 359.74044 * 14 12 11 19 19 F 1.35100 * 120.24361 * 180.25316 * 18 14 12 20 20 H 0.96998 * 120.00153 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.06597 * 359.97438 * 10 9 7 22 22 H 1.08001 * 119.75559 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2286 1.6178 0.0000 4 1 3.0824 1.6963 -1.2126 5 1 1.2636 2.7464 -0.0006 6 1 3.0823 1.6965 1.2125 7 6 2.0278 -1.2700 0.0006 8 1 3.0791 -1.2864 0.2476 9 6 1.3678 -2.4579 -0.3241 10 6 0.2029 -2.4307 -1.1278 11 6 -0.4326 -3.5924 -1.4392 12 6 0.0552 -4.8132 -0.9726 13 9 -0.5884 -5.9573 -1.2920 14 6 1.1966 -4.8633 -0.1826 15 7 1.7017 -6.1666 0.3041 16 8 2.5701 -6.8466 -0.4157 17 8 1.2829 -6.6463 1.4568 18 6 1.8625 -3.7023 0.1438 19 9 2.9758 -3.7482 0.9077 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1806 -1.4895 -1.4931 22 1 -1.3211 -3.5695 -2.0529 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000146485859.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -69.337022 kcal Electronic energy + Delta-G solvation = -15416.264900 eV Core-core repulsion = 12189.957642 eV Total energy + Delta-G solvation = -3226.307258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.034 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.94354 -49.85617 -40.52261 -39.15233 -35.96765 -35.75699 -32.70510 -31.94099 -27.78915 -27.17860 -23.50264 -23.42165 -20.52387 -19.67550 -19.18324 -18.58265 -18.50522 -17.27265 -16.86793 -16.59817 -16.30493 -16.30196 -15.54605 -15.22884 -14.25897 -13.96830 -13.41209 -13.17507 -12.95865 -12.92484 -12.77836 -12.49737 -12.16742 -12.10258 -12.00086 -11.38820 -10.39560 -9.90125 -9.19065 -6.81873 -1.56989 -0.20119 -0.13663 0.23820 1.35089 1.40852 1.51528 2.07356 2.13971 2.83496 2.90634 3.54895 3.79638 3.99134 4.09994 4.47519 4.61502 4.81059 4.93720 5.29788 5.33437 5.39431 5.55493 5.99689 6.08096 6.28490 7.72458 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.038951 B = 0.008891 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.673740 B = 3148.587173 C = 3659.707717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.043 3.957 3 Si 1.003 2.997 4 H -0.250 1.250 5 H -0.249 1.249 6 H -0.260 1.260 7 C -0.421 4.421 8 H 0.097 0.903 9 C 0.062 3.938 10 C -0.115 4.115 11 C -0.093 4.093 12 C -0.032 4.032 13 F -0.152 7.152 14 C -0.007 4.007 15 N -0.025 5.025 16 O -0.153 6.153 17 O -0.162 6.162 18 C -0.041 4.041 19 F -0.151 7.151 20 H 0.321 0.679 21 H 0.160 0.840 22 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.278 6.356 -2.790 7.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.186 4.186 3 Si 0.820 3.180 4 H -0.174 1.174 5 H -0.173 1.173 6 H -0.184 1.184 7 C -0.444 4.444 8 H 0.115 0.885 9 C 0.058 3.942 10 C -0.134 4.134 11 C -0.112 4.112 12 C -0.053 4.053 13 F -0.131 7.131 14 C -0.089 4.089 15 N 0.470 4.530 16 O -0.359 6.359 17 O -0.365 6.365 18 C -0.062 4.062 19 F -0.130 7.130 20 H 0.135 0.865 21 H 0.177 0.823 22 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.792 7.110 -2.995 7.920 hybrid contribution 0.615 -0.639 0.525 1.031 sum -1.177 6.470 -2.470 7.025 Atomic orbital electron populations 1.68946 1.10009 1.34551 1.22811 1.28448 0.95585 1.04623 0.89978 0.84909 0.79064 0.73162 0.80869 1.17405 1.17265 1.18391 1.21235 0.97948 0.90324 1.34872 0.88519 1.17785 0.94145 0.89426 0.92847 1.21268 0.96031 0.98368 0.97697 1.20717 1.01286 0.88415 1.00798 1.16721 0.94906 0.83889 1.09831 1.91382 1.80879 1.48701 1.92174 1.20453 1.01085 0.78421 1.08983 1.50574 0.98340 1.03302 1.00778 1.96185 1.25794 1.59693 1.54244 1.96196 1.61171 1.73875 1.05291 1.17223 0.91241 0.91869 1.05893 1.91328 1.50381 1.97100 1.74198 0.86452 0.82269 0.81486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -27.77 10.95 23.23 0.25 -27.51 14 2 C 0.04 1.61 5.35 87.24 0.47 2.08 14 3 Si 1.00 27.57 29.67 68.60 2.04 29.61 14 4 H -0.25 -6.82 7.11 99.48 0.71 -6.11 14 5 H -0.25 -6.09 7.11 99.48 0.71 -5.38 14 6 H -0.26 -7.38 7.11 99.48 0.71 -6.67 14 7 C -0.42 -18.55 9.04 24.82 0.22 -18.32 14 8 H 0.10 4.25 7.80 -2.91 -0.02 4.22 14 9 C 0.06 2.92 5.62 -21.21 -0.12 2.80 14 10 C -0.11 -4.77 8.71 22.57 0.20 -4.57 14 11 C -0.09 -3.65 9.95 22.06 0.22 -3.43 14 12 C -0.03 -1.46 7.33 22.73 0.17 -1.29 14 13 F -0.15 -6.81 17.08 44.97 0.77 -6.04 14 14 C -0.01 -0.33 6.28 36.42 0.23 -0.10 14 15 N -0.03 -1.27 4.53 -46.35 -0.21 -1.48 14 16 O -0.15 -7.50 19.97 3.51 0.07 -7.43 14 17 O -0.16 -8.05 19.97 3.52 0.07 -7.98 14 18 C -0.04 -2.05 7.33 23.05 0.17 -1.88 14 19 F -0.15 -7.75 16.56 44.97 0.74 -7.00 14 20 H 0.32 10.06 8.27 -92.71 -0.77 9.30 14 21 H 0.16 6.14 6.10 -2.91 -0.02 6.12 14 22 H 0.17 5.18 8.06 -2.91 -0.02 5.16 14 Total: -1.00 -52.48 229.87 6.58 -45.90 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.29 Total: 6.63 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 1.55 Total: -24.71 kcal Atomic # 7 Polarization: -29.03 SS G_CDS: 0.04 Total: -28.99 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.14 Total: -15.41 kcal Atomic # 9 Polarization: -14.55 SS G_CDS: 1.51 Total: -13.04 kcal Atomic # 14 Polarization: 27.57 SS G_CDS: 2.04 Total: 29.61 kcal Total: -52.48 6.58 -45.90 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146485859.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.436 kcal (2) G-P(sol) polarization free energy of solvation -52.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds