Wall clock time and date at job start Mon Mar 30 2020 03:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47140 * 179.97438 * 9 7 2 11 11 C 1.39919 * 110.99849 * 179.97438 * 10 9 7 12 12 C 1.39060 * 120.08582 * 299.72319 * 11 10 9 13 13 F 1.35097 * 120.04969 * 0.02562 * 12 11 10 14 14 C 1.38275 * 119.90299 * 179.72396 * 12 11 10 15 15 C 1.38319 * 120.06568 * 0.52912 * 14 12 11 16 16 C 1.38230 * 120.16752 * 359.77140 * 15 14 12 17 17 C 1.38281 * 120.10098 * 359.95052 * 16 15 14 18 18 Cl 1.73601 * 120.03850 * 180.02562 * 17 16 15 19 19 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 21 21 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 22 22 H 1.00902 * 110.99923 * 303.95945 * 10 9 7 23 23 H 1.07996 * 119.96761 * 180.27453 * 14 12 11 24 24 H 1.08002 * 119.91649 * 179.74308 * 15 14 12 25 25 H 1.08005 * 119.95486 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5387 -4.8457 0.0011 12 6 0.6823 -5.1738 1.0464 13 9 0.4923 -4.3050 2.0634 14 6 0.0206 -6.3879 1.0403 15 6 0.2185 -7.2797 0.0017 16 6 1.0739 -6.9591 -1.0357 17 6 1.7347 -5.7444 -1.0395 18 17 2.8082 -5.3432 -2.3435 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8897 21 1 0.6241 -2.5568 0.8903 22 1 2.8407 -3.5486 -0.7808 23 1 -0.6481 -6.6419 1.8494 24 1 -0.2964 -8.2291 0.0014 25 1 1.2261 -7.6582 -1.8448 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160380179.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:13 Heat of formation + Delta-G solvation = -50.313989 kcal Electronic energy + Delta-G solvation = -13431.442506 eV Core-core repulsion = 10770.129619 eV Total energy + Delta-G solvation = -2661.312887 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.84006 -40.40128 -37.49365 -37.03356 -34.67412 -31.43012 -30.80583 -28.10780 -24.62866 -23.85965 -22.66527 -19.10413 -18.60573 -17.87633 -17.25239 -16.77283 -16.43742 -15.83285 -15.58649 -15.14908 -14.84690 -14.45008 -14.16830 -13.59948 -13.11221 -12.84475 -12.69658 -12.49822 -12.35389 -12.13953 -12.03726 -11.53258 -10.97269 -10.55520 -9.73040 -8.86069 -8.30084 -6.43356 0.01011 0.16226 1.01380 1.38505 1.42742 1.50898 2.34368 2.46792 3.03321 3.14606 3.42005 3.85105 3.90635 4.27666 4.38112 4.77035 4.88757 4.96134 5.10619 5.15259 5.26229 5.47203 5.74699 5.88638 6.10841 6.44774 6.69940 7.26793 8.81774 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.032018 B = 0.008252 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.299980 B = 3392.341039 C = 4045.929468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.210 3.790 10 N -0.637 5.637 11 C 0.074 3.926 12 C 0.047 3.953 13 F -0.148 7.148 14 C -0.118 4.118 15 C -0.102 4.102 16 C -0.086 4.086 17 C -0.087 4.087 18 Cl -0.060 7.060 19 H 0.269 0.731 20 H -0.029 1.029 21 H 0.022 0.978 22 H 0.356 0.644 23 H 0.166 0.834 24 H 0.188 0.812 25 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 -15.237 -2.377 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.084 0.916 9 C 0.086 3.914 10 N -0.261 5.261 11 C -0.028 4.028 12 C 0.025 3.975 13 F -0.127 7.127 14 C -0.137 4.137 15 C -0.120 4.120 16 C -0.105 4.105 17 C -0.117 4.117 18 Cl -0.031 7.031 19 H 0.077 0.923 20 H -0.012 1.012 21 H 0.040 0.960 22 H 0.179 0.821 23 H 0.184 0.816 24 H 0.205 0.795 25 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.954 -14.922 -1.788 15.059 hybrid contribution 0.193 1.416 -0.612 1.554 sum 1.147 -13.506 -2.399 13.765 Atomic orbital electron populations 1.70082 1.07848 1.28459 1.50443 1.25960 0.95845 1.03434 0.93979 0.85308 0.78116 0.77146 0.79282 1.18843 1.20361 1.19285 1.21416 0.93836 0.91048 1.52286 0.91598 1.19433 0.90056 0.87131 0.94816 1.57694 1.19650 1.00625 1.48137 1.19221 0.96123 0.93618 0.93886 1.17728 1.02430 0.90807 0.86578 1.91445 1.94177 1.69491 1.57596 1.21526 0.99472 0.90834 1.01904 1.21326 0.98157 1.00820 0.91726 1.21392 0.94944 0.93619 1.00504 1.21094 1.01543 0.98756 0.90342 1.98340 1.63818 1.93918 1.47012 0.92261 1.01158 0.95985 0.82072 0.81599 0.79476 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.74 15 2 C 0.01 0.41 5.46 84.65 0.46 0.87 15 3 Si 0.98 44.89 29.54 68.60 2.03 46.92 15 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 7 C -0.55 -32.39 9.32 25.60 0.24 -32.15 15 8 H 0.07 3.77 7.81 -2.91 -0.02 3.75 15 9 C 0.21 11.90 5.11 85.56 0.44 12.34 15 10 N -0.64 -30.35 6.49 -341.91 -2.22 -32.57 15 11 C 0.07 3.01 5.78 38.20 0.22 3.23 15 12 C 0.05 1.78 6.99 22.48 0.16 1.94 15 13 F -0.15 -6.69 15.11 44.97 0.68 -6.01 15 14 C -0.12 -3.11 10.02 22.30 0.22 -2.88 15 15 C -0.10 -2.00 10.04 22.29 0.22 -1.77 15 16 C -0.09 -1.96 9.82 22.28 0.22 -1.74 15 17 C -0.09 -2.81 6.34 22.44 0.14 -2.66 15 18 Cl -0.06 -1.82 27.21 -2.72 -0.07 -1.90 15 19 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 20 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 15 21 H 0.02 1.36 6.08 -2.39 -0.01 1.34 15 22 H 0.36 16.03 6.71 -89.69 -0.60 15.43 15 23 H 0.17 3.32 8.06 -2.91 -0.02 3.30 15 24 H 0.19 1.83 8.06 -2.91 -0.02 1.81 15 25 H 0.17 2.65 8.06 -2.91 -0.02 2.63 15 Total: -1.00 -69.39 243.05 3.64 -65.75 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.62 Total: 7.37 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 2.32 Total: -22.83 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -1.93 Total: -89.30 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.68 Total: -6.01 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.90 kcal Total: -69.39 3.64 -65.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160380179.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.434 kcal (2) G-P(sol) polarization free energy of solvation -69.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds