Wall clock time and date at job start Mon Mar 30 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35508 * 126.07007 * 2 1 4 4 H 0.97006 * 124.85259 * 359.97438 * 3 2 1 5 5 C 1.36689 * 110.30465 * 179.82472 * 3 2 1 6 6 Br 1.89100 * 125.29615 * 180.14698 * 5 3 2 7 7 C 1.34420 * 109.40888 * 0.44636 * 5 3 2 8 8 C 1.39290 * 126.07088 * 180.31207 * 2 1 3 9 9 C 1.41339 * 127.08509 * 359.97438 * 8 2 1 10 10 H 1.08004 * 119.99968 * 0.02562 * 9 8 2 11 11 C 1.39666 * 120.00274 * 180.02562 * 9 8 2 12 12 N 1.31064 * 119.99683 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00122 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47592 * 89.99652 * 13 11 9 15 15 H 1.48503 * 109.46934 * 209.99671 * 13 11 9 16 16 H 1.48497 * 109.47029 * 329.99347 * 13 11 9 17 17 H 1.09002 * 109.47152 * 269.69100 * 1 2 3 18 18 H 1.09001 * 109.46980 * 149.69200 * 1 2 3 19 19 H 1.09004 * 109.47113 * 29.69181 * 1 2 3 20 20 H 1.08007 * 126.70212 * 179.75791 * 7 5 3 21 21 H 0.96997 * 119.99586 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3049 1.0953 0.0000 4 1 1.9878 2.0121 -0.0004 5 6 3.6203 0.7239 0.0039 6 35 5.0912 1.9124 0.0094 7 6 3.7058 -0.6175 -0.0033 8 6 2.3271 -1.1259 -0.0061 9 6 1.9176 -2.4786 -0.0130 10 1 0.8659 -2.7244 -0.0143 11 6 2.8728 -3.4975 -0.0181 12 7 4.1491 -3.1992 -0.0170 13 14 2.3315 -5.2853 -0.0279 14 1 2.1885 -5.7516 -1.4304 15 1 3.3483 -6.1141 0.6681 16 1 1.0274 -5.4114 0.6711 17 1 -0.3633 -0.0055 1.0277 18 1 -0.3633 -0.8872 -0.5186 19 1 -0.3633 0.8928 -0.5091 20 1 4.6110 -1.2067 -0.0062 21 1 4.8125 -3.9068 -0.0209 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214955727.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:37 Heat of formation + Delta-G solvation = 28.874973 kcal Electronic energy + Delta-G solvation = -9022.172775 eV Core-core repulsion = 7137.493303 eV Total energy + Delta-G solvation = -1884.679472 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 228.980 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.06825 -33.38807 -31.11132 -29.46535 -29.15228 -25.98667 -23.38023 -19.15799 -18.82512 -16.42794 -15.31437 -14.70148 -13.34759 -12.87835 -12.32160 -11.99045 -11.73953 -11.41615 -11.14284 -10.94191 -10.64930 -9.93839 -9.92449 -9.89444 -9.22858 -9.20213 -7.21294 -6.72062 -6.35693 -3.95748 2.44849 3.09322 3.22659 3.26361 3.47413 4.16593 4.32027 4.78726 5.61862 6.18996 6.34361 6.54290 6.80300 7.20039 7.29093 7.46768 7.79105 8.20323 8.36521 8.81335 8.89530 9.22299 9.27253 10.60685 Molecular weight = 228.98amu Principal moments of inertia in cm(-1) A = 0.042731 B = 0.009832 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.102871 B = 2847.144142 C = 3487.102200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.135 4.135 3 N -0.561 5.561 4 H 0.389 0.611 5 C -0.020 4.020 6 Br -0.064 7.064 7 C -0.148 4.148 8 C 0.047 3.953 9 C -0.438 4.438 10 H 0.070 0.930 11 C 0.068 3.932 12 N -0.827 5.827 13 Si 0.910 3.090 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.267 1.267 17 H 0.041 0.959 18 H 0.065 0.935 19 H 0.034 0.966 20 H 0.162 0.838 21 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 6.894 -0.011 6.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.244 4.244 3 N -0.163 5.163 4 H 0.222 0.778 5 C -0.207 4.207 6 Br 0.019 6.981 7 C -0.180 4.180 8 C 0.040 3.960 9 C -0.472 4.472 10 H 0.088 0.912 11 C -0.144 4.144 12 N -0.456 5.456 13 Si 0.736 3.264 14 H -0.200 1.200 15 H -0.206 1.206 16 H -0.191 1.191 17 H 0.060 0.940 18 H 0.084 0.916 19 H 0.053 0.947 20 H 0.180 0.820 21 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.087 7.315 -0.007 7.395 hybrid contribution -0.570 -0.578 -0.006 0.811 sum 0.518 6.737 -0.014 6.757 Atomic orbital electron populations 1.19741 0.90075 1.00423 0.99790 1.20331 0.91461 0.85875 1.26690 1.40913 1.03549 1.06913 1.64915 0.77830 1.21522 0.82307 0.93052 1.23806 1.96418 1.40065 1.62929 1.98684 1.22691 0.99773 0.88565 1.06944 1.18254 0.89346 0.91316 0.97125 1.18718 0.93469 0.89238 1.45734 0.91164 1.25696 0.94553 1.00746 0.93391 1.69746 1.00929 1.33817 1.41151 0.86298 0.79028 0.82398 0.78696 1.19984 1.20646 1.19124 0.94007 0.91629 0.94676 0.82040 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.83 10.23 36.01 0.37 -0.46 14 2 C -0.13 -3.22 7.31 -80.58 -0.59 -3.80 14 3 N -0.56 -12.28 5.95 -6.79 -0.04 -12.32 14 4 H 0.39 7.14 8.96 -40.82 -0.37 6.77 14 5 C -0.02 -0.47 7.58 -16.74 -0.13 -0.60 14 6 Br -0.06 -1.19 34.08 -68.01 -2.32 -3.51 14 7 C -0.15 -3.93 9.81 -37.41 -0.37 -4.30 14 8 C 0.05 1.28 6.09 -104.81 -0.64 0.64 14 9 C -0.44 -12.01 9.12 -37.87 -0.35 -12.36 14 10 H 0.07 1.84 7.36 -52.48 -0.39 1.45 14 11 C 0.07 1.80 5.49 -17.35 -0.10 1.70 14 12 N -0.83 -22.36 10.42 55.53 0.58 -21.78 14 13 Si 0.91 19.78 29.56 -169.99 -5.02 14.75 14 14 H -0.27 -5.89 7.11 56.52 0.40 -5.49 14 15 H -0.28 -6.02 7.11 56.52 0.40 -5.61 14 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 14 17 H 0.04 0.76 8.14 -51.93 -0.42 0.34 14 18 H 0.06 1.28 7.60 -51.93 -0.39 0.88 14 19 H 0.03 0.58 8.14 -51.93 -0.42 0.16 14 20 H 0.16 4.51 6.02 -52.48 -0.32 4.19 14 21 H 0.27 6.77 8.30 -40.82 -0.34 6.43 14 LS Contribution 211.47 15.07 3.19 3.19 Total: -1.00 -28.17 211.47 -6.85 -35.02 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -1.44 Total: 3.83 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -1.79 Total: -19.18 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.54 Total: -34.10 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 35 Polarization: -1.19 SS G_CDS: -2.32 Total: -3.51 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -28.17 -6.85 -35.02 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214955727.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.898 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds