Wall clock time and date at job start Mon Mar 30 2020 03:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35508 * 126.07007 * 2 1 4 4 H 0.97006 * 124.85259 * 359.97438 * 3 2 1 5 5 C 1.36689 * 110.30465 * 179.82472 * 3 2 1 6 6 Br 1.89100 * 125.29615 * 180.14698 * 5 3 2 7 7 C 1.34420 * 109.40888 * 0.44636 * 5 3 2 8 8 C 1.39290 * 126.07088 * 180.31207 * 2 1 3 9 9 C 1.41339 * 127.08509 * 359.97438 * 8 2 1 10 10 H 1.08004 * 119.99968 * 0.02562 * 9 8 2 11 11 C 1.39666 * 120.00274 * 180.02562 * 9 8 2 12 12 N 1.31064 * 119.99683 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00122 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47592 * 89.99652 * 13 11 9 15 15 H 1.48503 * 109.46934 * 209.99671 * 13 11 9 16 16 H 1.48497 * 109.47029 * 329.99347 * 13 11 9 17 17 H 1.09002 * 109.47152 * 269.69100 * 1 2 3 18 18 H 1.09001 * 109.46980 * 149.69200 * 1 2 3 19 19 H 1.09004 * 109.47113 * 29.69181 * 1 2 3 20 20 H 1.08007 * 126.70212 * 179.75791 * 7 5 3 21 21 H 0.96997 * 119.99586 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3049 1.0953 0.0000 4 1 1.9878 2.0121 -0.0004 5 6 3.6203 0.7239 0.0039 6 35 5.0912 1.9124 0.0094 7 6 3.7058 -0.6175 -0.0033 8 6 2.3271 -1.1259 -0.0061 9 6 1.9176 -2.4786 -0.0130 10 1 0.8659 -2.7244 -0.0143 11 6 2.8728 -3.4975 -0.0181 12 7 4.1491 -3.1992 -0.0170 13 14 2.3315 -5.2853 -0.0279 14 1 2.1885 -5.7516 -1.4304 15 1 3.3483 -6.1141 0.6681 16 1 1.0274 -5.4114 0.6711 17 1 -0.3633 -0.0055 1.0277 18 1 -0.3633 -0.8872 -0.5186 19 1 -0.3633 0.8928 -0.5091 20 1 4.6110 -1.2067 -0.0062 21 1 4.8125 -3.9068 -0.0209 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214955727.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:37 Heat of formation + Delta-G solvation = 11.787615 kcal Electronic energy + Delta-G solvation = -9022.913739 eV Core-core repulsion = 7137.493303 eV Total energy + Delta-G solvation = -1885.420435 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 228.980 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.92603 -35.32369 -32.84857 -31.33342 -30.89037 -27.88706 -25.21376 -21.08575 -20.71467 -18.32314 -17.17228 -16.52395 -15.12352 -14.65393 -14.11046 -13.83134 -13.32170 -13.14431 -12.88594 -12.76981 -12.40783 -11.72993 -11.66606 -11.57571 -11.11875 -11.00469 -9.16139 -8.57411 -8.27942 -5.95309 0.66834 1.35606 1.45526 1.57995 1.63822 2.35881 2.37034 3.06701 3.62386 4.64829 4.68857 5.00997 5.20208 5.30342 5.37175 5.57628 5.87260 6.20069 6.42663 6.83811 7.11046 7.24826 7.36589 8.69609 Molecular weight = 228.98amu Principal moments of inertia in cm(-1) A = 0.042731 B = 0.009832 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.102871 B = 2847.144142 C = 3487.102200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.126 4.126 3 N -0.544 5.544 4 H 0.409 0.591 5 C -0.021 4.021 6 Br -0.018 7.018 7 C -0.188 4.188 8 C -0.007 4.007 9 C -0.470 4.470 10 H 0.071 0.929 11 C 0.019 3.981 12 N -0.859 5.859 13 Si 0.982 3.018 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.261 1.261 17 H 0.056 0.944 18 H 0.061 0.939 19 H 0.068 0.932 20 H 0.140 0.860 21 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 7.657 -0.005 7.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.236 4.236 3 N -0.146 5.146 4 H 0.246 0.754 5 C -0.210 4.210 6 Br 0.065 6.935 7 C -0.220 4.220 8 C -0.014 4.014 9 C -0.503 4.503 10 H 0.090 0.910 11 C -0.189 4.189 12 N -0.490 5.490 13 Si 0.804 3.196 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.185 1.185 17 H 0.075 0.925 18 H 0.080 0.920 19 H 0.086 0.914 20 H 0.158 0.842 21 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.154 8.118 -0.002 8.120 hybrid contribution -0.252 -0.626 -0.007 0.675 sum -0.098 7.492 -0.008 7.493 Atomic orbital electron populations 1.19830 0.86979 1.01903 1.01151 1.20940 0.93430 0.85469 1.23772 1.40932 1.03015 1.07734 1.62919 0.75419 1.21673 0.83997 0.93316 1.21995 1.96432 1.37865 1.60640 1.98571 1.22532 0.99208 0.90232 1.10041 1.18733 0.90593 0.92621 0.99483 1.19006 0.93836 0.90245 1.47256 0.91045 1.26559 0.94477 1.05022 0.92857 1.69879 1.01912 1.35072 1.42155 0.85204 0.78722 0.76821 0.78819 1.19425 1.20109 1.18450 0.92524 0.91990 0.91352 0.84241 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.49 10.23 71.24 0.73 -0.76 14 2 C -0.13 -5.83 7.31 42.25 0.31 -5.52 14 3 N -0.54 -22.77 5.95 -175.38 -1.04 -23.82 14 4 H 0.41 13.75 8.96 -92.70 -0.83 12.92 14 5 C -0.02 -0.98 7.58 83.06 0.63 -0.35 14 6 Br -0.02 -0.64 34.08 -20.37 -0.69 -1.33 14 7 C -0.19 -10.23 9.81 23.68 0.23 -10.00 14 8 C -0.01 -0.40 6.09 -19.98 -0.12 -0.52 14 9 C -0.47 -26.27 9.12 23.38 0.21 -26.06 14 10 H 0.07 3.79 7.36 -2.91 -0.02 3.77 14 11 C 0.02 1.03 5.49 85.15 0.47 1.50 14 12 N -0.86 -48.00 10.42 21.79 0.23 -47.77 14 13 Si 0.98 41.07 29.56 68.60 2.03 43.10 14 14 H -0.27 -10.92 7.11 99.48 0.71 -10.21 14 15 H -0.28 -11.18 7.11 99.48 0.71 -10.47 14 16 H -0.26 -10.49 7.11 99.48 0.71 -9.78 14 17 H 0.06 1.92 8.14 -2.39 -0.02 1.90 14 18 H 0.06 2.31 7.60 -2.39 -0.02 2.29 14 19 H 0.07 2.03 8.14 -2.38 -0.02 2.01 14 20 H 0.14 8.13 6.02 -2.91 -0.02 8.11 14 21 H 0.27 14.10 8.30 -92.71 -0.77 13.33 14 Total: -1.00 -61.08 211.47 3.40 -57.68 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.42 Total: 13.86 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 2.46 Total: -41.72 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -0.82 Total: -71.59 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -0.69 Total: -1.33 kcal Total: -61.08 3.40 -57.68 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214955727.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.464 kcal (2) G-P(sol) polarization free energy of solvation -61.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds