Wall clock time and date at job start Mon Mar 30 2020 02:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99917 * 2 1 4 4 C 1.53001 * 109.47226 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47081 * 65.00379 * 4 3 2 6 6 C 1.46957 * 111.00192 * 66.04268 * 5 4 3 7 7 C 1.53040 * 109.36778 * 183.18859 * 6 5 4 8 8 N 1.46953 * 109.36868 * 301.60312 * 7 6 5 9 9 C 1.46898 * 111.00145 * 183.18836 * 8 7 6 10 10 C 1.46957 * 110.88009 * 59.31392 * 8 7 6 11 11 H 1.09003 * 109.48268 * 60.65501 * 10 8 7 12 12 C 1.50698 * 109.48940 * 180.71066 * 10 8 7 13 13 H 1.08007 * 119.99894 * 35.11462 * 12 10 8 14 14 C 1.37877 * 120.00472 * 215.10460 * 12 10 8 15 15 N 1.31513 * 119.99521 * 5.20673 * 14 12 10 16 16 Si 1.86795 * 120.00009 * 185.20351 * 14 12 10 17 17 H 1.48502 * 109.47278 * 90.00579 * 16 14 12 18 18 H 1.48509 * 109.47056 * 209.99976 * 16 14 12 19 19 H 1.48495 * 109.47677 * 330.00064 * 16 14 12 20 20 C 1.46953 * 111.00484 * 189.84668 * 5 4 3 21 21 H 1.08994 * 109.47173 * 299.99247 * 1 2 3 22 22 H 1.09000 * 109.47516 * 60.00080 * 1 2 3 23 23 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47307 * 300.00584 * 3 2 1 25 25 H 1.09004 * 109.46695 * 60.00628 * 3 2 1 26 26 H 1.09001 * 109.47281 * 184.99977 * 4 3 2 27 27 H 1.08997 * 109.47547 * 305.00582 * 4 3 2 28 28 H 1.09003 * 109.49190 * 303.16425 * 6 5 4 29 29 H 1.09002 * 109.48187 * 63.20012 * 6 5 4 30 30 H 1.09004 * 109.48961 * 61.56851 * 7 6 5 31 31 H 1.09001 * 109.49044 * 181.61092 * 7 6 5 32 32 H 1.08993 * 109.47433 * 54.19053 * 9 8 7 33 33 H 1.09005 * 109.47083 * 174.19467 * 9 8 7 34 34 H 1.09003 * 109.47046 * 294.18681 * 9 8 7 35 35 H 0.97002 * 119.99972 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.48502 * 296.78076 * 20 5 4 37 37 H 1.09001 * 109.48628 * 56.84017 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9778 0.5624 -1.2543 6 6 3.6967 1.4352 -2.4028 7 6 4.0984 0.7195 -3.6945 8 7 5.5255 0.3737 -3.6365 9 6 5.9678 -0.2486 -4.8915 10 6 5.8067 -0.4991 -2.4880 11 1 5.2357 -1.4226 -2.5849 12 6 7.2787 -0.8195 -2.4485 13 1 8.0013 -0.0770 -2.7537 14 6 7.7030 -2.0603 -2.0227 15 7 6.8226 -2.9980 -1.7488 16 14 9.5285 -2.4093 -1.8350 17 1 9.9593 -2.0640 -0.4564 18 1 9.7855 -3.8501 -2.0875 19 1 10.2919 -1.5917 -2.8116 20 6 5.4049 0.2166 -1.1963 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6885 1.8464 -0.8899 25 1 1.6885 1.8463 0.8901 26 1 3.9784 2.1766 0.0902 27 1 3.8508 0.5685 0.8426 28 1 2.6319 1.6669 -2.4314 29 1 4.2673 2.3588 -2.3058 30 1 3.5080 -0.1902 -3.8050 31 1 3.9173 1.3761 -4.5455 32 1 5.7158 0.4024 -5.7284 33 1 7.0469 -0.4003 -4.8612 34 1 5.4693 -1.2099 -5.0158 35 1 7.1211 -3.8711 -1.4495 36 1 5.9953 1.1262 -1.0858 37 1 5.5856 -0.4402 -0.3453 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219604647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:24 Heat of formation + Delta-G solvation = -29.292394 kcal Electronic energy + Delta-G solvation = -16867.837657 eV Core-core repulsion = 14259.572326 eV Total energy + Delta-G solvation = -2608.265331 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.61091 -37.34872 -34.68038 -32.69426 -29.92694 -29.78900 -26.91501 -25.79057 -24.83365 -22.77813 -22.26902 -20.62584 -18.66856 -16.50055 -16.22431 -15.93936 -15.01781 -14.76216 -14.52664 -14.01235 -13.77232 -13.41257 -13.28699 -13.07053 -12.31043 -11.94917 -11.66582 -11.42540 -11.28544 -11.01627 -10.91532 -10.76925 -10.58059 -10.52538 -10.24112 -9.76073 -9.59177 -9.39037 -8.94637 -8.48964 -7.51714 -7.03412 -6.00143 -4.05958 3.31625 3.38598 3.42056 4.03086 4.41003 4.60134 5.10562 5.22588 5.33622 5.38281 5.48807 5.50542 5.56652 5.73043 5.77223 5.88599 5.95757 6.03055 6.19884 6.31825 6.37110 6.51804 6.65964 6.74496 6.79017 6.98331 7.30546 7.40656 7.65852 7.79261 7.86831 7.95574 8.14537 8.33173 8.70525 9.11280 9.59867 11.06668 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.007636 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.629350 B = 3666.157297 C = 4140.735907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.067 3.933 4 C 0.055 3.945 5 N -0.533 5.533 6 C 0.062 3.938 7 C 0.057 3.943 8 N -0.547 5.547 9 C 0.049 3.951 10 C 0.206 3.794 11 H 0.043 0.957 12 C -0.507 4.507 13 H 0.060 0.940 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.078 3.922 21 H 0.033 0.967 22 H 0.035 0.965 23 H 0.082 0.918 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.013 0.987 35 H 0.262 0.738 36 H 0.020 0.980 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.148 7.691 1.344 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.010 4.010 4 C -0.073 4.073 5 N -0.259 5.259 6 C -0.066 4.066 7 C -0.072 4.072 8 N -0.273 5.273 9 C -0.100 4.100 10 C 0.100 3.900 11 H 0.061 0.939 12 C -0.546 4.546 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.524 5.524 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.049 4.049 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.101 0.899 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.047 7.318 1.413 11.722 hybrid contribution 0.673 -0.007 0.213 0.706 sum -8.374 7.311 1.626 11.234 Atomic orbital electron populations 1.22689 0.82373 1.02393 0.99126 1.88086 1.18269 1.27267 1.95092 1.22606 0.94335 0.84974 0.99077 1.22075 0.92691 0.97866 0.94699 1.62254 1.20937 1.41729 1.00931 1.22075 0.98774 0.94241 0.91505 1.22017 0.91066 0.98387 0.95719 1.62354 1.13668 1.46610 1.04646 1.22004 1.02002 0.95548 0.90407 1.19453 0.96321 0.90211 0.84021 0.93907 1.20988 0.91171 0.98299 1.44186 0.92160 1.25030 0.97667 0.95970 0.95160 1.69969 1.33379 1.03919 1.45120 0.86571 0.85415 0.77293 0.78558 1.20605 1.21321 1.19810 1.22446 0.83005 0.98035 1.01462 0.94835 0.94589 0.89935 0.93546 0.93840 0.94113 0.90208 0.91987 0.95212 0.95221 0.92338 0.94451 0.90720 0.96875 0.92824 0.96167 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.13 10.65 -35.23 -0.38 -6.51 16 3 C 0.07 0.97 6.00 37.16 0.22 1.19 16 4 C 0.06 0.93 5.34 -3.82 -0.02 0.91 16 5 N -0.53 -10.95 4.66 -234.48 -1.09 -12.05 16 6 C 0.06 1.15 5.41 -3.77 -0.02 1.13 16 7 C 0.06 1.13 5.62 -3.77 -0.02 1.11 16 8 N -0.55 -12.57 4.77 -236.14 -1.13 -13.70 16 9 C 0.05 1.05 9.23 60.06 0.55 1.61 16 10 C 0.21 5.36 2.11 -68.81 -0.15 5.21 16 11 H 0.04 1.29 7.24 -51.93 -0.38 0.91 16 12 C -0.51 -14.00 6.98 -34.44 -0.24 -14.24 16 13 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 14 C 0.06 1.81 5.45 -17.82 -0.10 1.71 16 15 N -0.89 -25.94 12.77 55.43 0.71 -25.23 16 16 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.08 1.85 4.87 -3.77 -0.02 1.83 16 21 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.63 6.28 -51.93 -0.33 0.30 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.04 0.63 8.12 -51.93 -0.42 0.20 16 27 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 28 H 0.06 1.00 6.24 -51.93 -0.32 0.67 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 32 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.07 1.69 7.08 -51.93 -0.37 1.32 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 1.78 8.07 -51.93 -0.42 1.36 16 LS Contribution 294.28 15.07 4.43 4.43 Total: -1.00 -30.37 294.28 -7.57 -37.94 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -6.42 Total: -3.16 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 1.33 Total: 1.95 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -1.51 Total: -50.98 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.38 Total: -6.51 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.37 -7.57 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219604647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.645 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds