Wall clock time and date at job start Mon Mar 30 2020 02:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 113.99917 * 2 1 4 4 C 1.53001 * 109.47226 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47081 * 65.00379 * 4 3 2 6 6 C 1.46957 * 111.00192 * 66.04268 * 5 4 3 7 7 C 1.53040 * 109.36778 * 183.18859 * 6 5 4 8 8 N 1.46953 * 109.36868 * 301.60312 * 7 6 5 9 9 C 1.46898 * 111.00145 * 183.18836 * 8 7 6 10 10 C 1.46957 * 110.88009 * 59.31392 * 8 7 6 11 11 H 1.09003 * 109.48268 * 60.65501 * 10 8 7 12 12 C 1.50698 * 109.48940 * 180.71066 * 10 8 7 13 13 H 1.08007 * 119.99894 * 35.11462 * 12 10 8 14 14 C 1.37877 * 120.00472 * 215.10460 * 12 10 8 15 15 N 1.31513 * 119.99521 * 5.20673 * 14 12 10 16 16 Si 1.86795 * 120.00009 * 185.20351 * 14 12 10 17 17 H 1.48502 * 109.47278 * 90.00579 * 16 14 12 18 18 H 1.48509 * 109.47056 * 209.99976 * 16 14 12 19 19 H 1.48495 * 109.47677 * 330.00064 * 16 14 12 20 20 C 1.46953 * 111.00484 * 189.84668 * 5 4 3 21 21 H 1.08994 * 109.47173 * 299.99247 * 1 2 3 22 22 H 1.09000 * 109.47516 * 60.00080 * 1 2 3 23 23 H 1.09002 * 109.47100 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47307 * 300.00584 * 3 2 1 25 25 H 1.09004 * 109.46695 * 60.00628 * 3 2 1 26 26 H 1.09001 * 109.47281 * 184.99977 * 4 3 2 27 27 H 1.08997 * 109.47547 * 305.00582 * 4 3 2 28 28 H 1.09003 * 109.49190 * 303.16425 * 6 5 4 29 29 H 1.09002 * 109.48187 * 63.20012 * 6 5 4 30 30 H 1.09004 * 109.48961 * 61.56851 * 7 6 5 31 31 H 1.09001 * 109.49044 * 181.61092 * 7 6 5 32 32 H 1.08993 * 109.47433 * 54.19053 * 9 8 7 33 33 H 1.09005 * 109.47083 * 174.19467 * 9 8 7 34 34 H 1.09003 * 109.47046 * 294.18681 * 9 8 7 35 35 H 0.97002 * 119.99972 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.48502 * 296.78076 * 20 5 4 37 37 H 1.09001 * 109.48628 * 56.84017 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9778 0.5624 -1.2543 6 6 3.6967 1.4352 -2.4028 7 6 4.0984 0.7195 -3.6945 8 7 5.5255 0.3737 -3.6365 9 6 5.9678 -0.2486 -4.8915 10 6 5.8067 -0.4991 -2.4880 11 1 5.2357 -1.4226 -2.5849 12 6 7.2787 -0.8195 -2.4485 13 1 8.0013 -0.0770 -2.7537 14 6 7.7030 -2.0603 -2.0227 15 7 6.8226 -2.9980 -1.7488 16 14 9.5285 -2.4093 -1.8350 17 1 9.9593 -2.0640 -0.4564 18 1 9.7855 -3.8501 -2.0875 19 1 10.2919 -1.5917 -2.8116 20 6 5.4049 0.2166 -1.1963 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6885 1.8464 -0.8899 25 1 1.6885 1.8463 0.8901 26 1 3.9784 2.1766 0.0902 27 1 3.8508 0.5685 0.8426 28 1 2.6319 1.6669 -2.4314 29 1 4.2673 2.3588 -2.3058 30 1 3.5080 -0.1902 -3.8050 31 1 3.9173 1.3761 -4.5455 32 1 5.7158 0.4024 -5.7284 33 1 7.0469 -0.4003 -4.8612 34 1 5.4693 -1.2099 -5.0158 35 1 7.1211 -3.8711 -1.4495 36 1 5.9953 1.1262 -1.0858 37 1 5.5856 -0.4402 -0.3453 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219604647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:24 Heat of formation + Delta-G solvation = -52.899922 kcal Electronic energy + Delta-G solvation = -16868.861357 eV Core-core repulsion = 14259.572326 eV Total energy + Delta-G solvation = -2609.289030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.20581 -38.62868 -36.30430 -34.74726 -31.67877 -31.26737 -28.44855 -27.13464 -26.59630 -24.33591 -24.03008 -22.16431 -20.44578 -18.52294 -17.42226 -17.31999 -16.69952 -16.25890 -15.95125 -15.62158 -15.43696 -15.20980 -14.79934 -14.69263 -13.98522 -13.46006 -13.10882 -12.90988 -12.84774 -12.72785 -12.57055 -12.46055 -12.31528 -12.04714 -11.83923 -11.67266 -11.42452 -10.90126 -10.60874 -10.47664 -9.11614 -8.91790 -8.13375 -6.26761 1.41787 1.42289 1.53611 2.41127 2.94486 3.03383 3.23510 3.48208 4.06148 4.14877 4.30454 4.34956 4.45302 4.49164 4.56590 4.58070 4.64378 4.69981 4.71657 4.79035 4.85076 4.89718 4.95469 4.98460 5.06957 5.19947 5.39897 5.59774 5.70513 6.02893 6.21656 6.29951 6.38197 6.51734 6.77722 6.96687 7.43404 8.93503 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.029634 B = 0.007636 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.629350 B = 3666.157297 C = 4140.735907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.071 3.929 4 C 0.052 3.948 5 N -0.553 5.553 6 C 0.066 3.934 7 C 0.055 3.945 8 N -0.552 5.552 9 C 0.053 3.947 10 C 0.211 3.789 11 H -0.007 1.007 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.014 3.986 15 N -0.924 5.924 16 Si 0.961 3.039 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.094 3.906 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.010 0.990 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.056 0.944 34 H -0.006 1.006 35 H 0.262 0.738 36 H 0.019 0.981 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.769 9.623 1.152 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.005 4.005 4 C -0.076 4.076 5 N -0.278 5.278 6 C -0.062 4.062 7 C -0.074 4.074 8 N -0.278 5.278 9 C -0.096 4.096 10 C 0.104 3.896 11 H 0.011 0.989 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.185 4.185 15 N -0.563 5.563 16 Si 0.786 3.214 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.034 4.034 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.056 0.944 30 H 0.029 0.971 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.013 0.987 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.686 9.278 1.214 13.468 hybrid contribution 0.769 -0.573 0.241 0.989 sum -8.917 8.705 1.456 12.546 Atomic orbital electron populations 1.22867 0.80156 1.03197 1.00735 1.88028 1.20860 1.28730 1.95459 1.22626 0.92082 0.84640 1.01155 1.22186 0.94959 0.98137 0.92279 1.62154 1.18343 1.43879 1.03413 1.22142 1.00726 0.93616 0.89716 1.22187 0.88628 0.98393 0.98185 1.62332 1.16027 1.45275 1.04119 1.21997 1.00667 0.95635 0.91253 1.19215 0.94896 0.89077 0.86393 0.98932 1.21212 0.92090 0.98372 1.43941 0.92655 1.25831 1.02147 0.95718 0.94809 1.70118 1.35527 1.04322 1.46345 0.85514 0.79937 0.77151 0.78791 1.19909 1.21018 1.18901 1.21994 0.85556 0.96926 0.98930 0.92673 0.93393 0.89721 0.92238 0.90745 0.92100 0.91799 0.88863 0.94407 0.97148 0.88773 0.90426 0.92472 0.98732 0.92882 0.96331 0.94286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -13.07 10.65 -148.98 -1.59 -14.66 16 3 C 0.07 1.87 6.00 71.98 0.43 2.30 16 4 C 0.05 1.69 5.34 86.30 0.46 2.15 16 5 N -0.55 -22.45 4.66 -895.74 -4.17 -26.62 16 6 C 0.07 2.27 5.41 86.31 0.47 2.74 16 7 C 0.05 2.07 5.62 86.31 0.48 2.56 16 8 N -0.55 -25.21 4.77 -901.01 -4.30 -29.51 16 9 C 0.05 2.26 9.23 127.69 1.18 3.44 16 10 C 0.21 11.32 2.11 44.17 0.09 11.42 16 11 H -0.01 -0.46 7.24 -2.39 -0.02 -0.47 16 12 C -0.52 -29.25 6.98 25.60 0.18 -29.07 16 13 H 0.06 3.12 7.82 -2.91 -0.02 3.10 16 14 C 0.01 0.82 5.45 84.65 0.46 1.28 16 15 N -0.92 -56.12 12.77 21.45 0.27 -55.85 16 16 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 20 C 0.09 4.59 4.87 86.31 0.42 5.01 16 21 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.06 1.39 6.28 -2.39 -0.02 1.37 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.72 8.12 -2.39 -0.02 1.70 16 27 H 0.06 2.24 8.03 -2.39 -0.02 2.22 16 28 H 0.09 2.66 6.24 -2.39 -0.01 2.64 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.09 2.91 8.11 -2.39 -0.02 2.89 16 32 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 33 H 0.06 2.60 7.08 -2.38 -0.02 2.59 16 34 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.04 2.08 8.07 -2.39 -0.02 2.06 16 Total: -1.00 -67.78 294.28 -1.32 -69.10 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.01 Total: 7.40 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.43 Total: 3.65 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -8.20 Total: -111.98 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.59 Total: -14.66 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.78 -1.32 -69.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219604647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.203 kcal (2) G-P(sol) polarization free energy of solvation -67.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds