Wall clock time and date at job start Mon Mar 30 2020 02:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00017 * 2 1 4 4 C 1.53002 * 109.47053 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47694 * 67.34445 * 4 3 2 6 6 C 1.46962 * 110.99819 * 286.51017 * 5 4 3 7 7 C 1.53047 * 109.36441 * 176.80800 * 6 5 4 8 8 N 1.46957 * 109.36392 * 58.39962 * 7 6 5 9 9 C 1.46906 * 111.00184 * 176.80937 * 8 7 6 10 10 C 1.46956 * 110.88231 * 300.68355 * 8 7 6 11 11 C 1.46955 * 111.00151 * 162.71136 * 5 4 3 12 12 H 1.08993 * 109.50792 * 63.21318 * 11 5 4 13 13 C 1.50701 * 109.48498 * 303.15321 * 11 5 4 14 14 H 1.08000 * 120.00432 * 0.10989 * 13 11 5 15 15 C 1.37878 * 119.99532 * 180.11179 * 13 11 5 16 16 N 1.31514 * 120.00062 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 120.00144 * 359.97438 * 15 13 11 18 18 H 1.48504 * 109.47039 * 90.00156 * 17 15 13 19 19 H 1.48504 * 109.47117 * 209.99945 * 17 15 13 20 20 H 1.48495 * 109.47252 * 330.00192 * 17 15 13 21 21 H 1.09000 * 109.47168 * 60.00211 * 1 2 3 22 22 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47338 * 300.00514 * 1 2 3 24 24 H 1.08998 * 109.47593 * 59.99493 * 3 2 1 25 25 H 1.09003 * 109.47007 * 299.99738 * 3 2 1 26 26 H 1.09003 * 109.46735 * 307.33984 * 4 3 2 27 27 H 1.09003 * 109.47277 * 187.34767 * 4 3 2 28 28 H 1.08994 * 109.48874 * 296.77562 * 6 5 4 29 29 H 1.09004 * 109.48622 * 56.81972 * 6 5 4 30 30 H 1.09006 * 109.49312 * 298.43752 * 7 6 5 31 31 H 1.08997 * 109.49080 * 178.37197 * 7 6 5 32 32 H 1.08996 * 109.46977 * 183.79783 * 9 8 7 33 33 H 1.08998 * 109.46468 * 63.80451 * 9 8 7 34 34 H 1.08996 * 109.46831 * 303.80612 * 9 8 7 35 35 H 1.09001 * 109.48726 * 179.28845 * 10 8 7 36 36 H 1.09004 * 109.48696 * 299.34895 * 10 8 7 37 37 H 0.96997 * 120.00232 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9810 0.6144 -1.2790 6 6 3.6747 -0.8212 -1.3506 7 6 4.0811 -1.3589 -2.7246 8 7 5.5151 -1.1181 -2.9374 9 6 5.9607 -1.6884 -4.2158 10 6 5.8215 0.3174 -2.8658 11 6 5.4150 0.8551 -1.4917 12 1 5.9885 0.3453 -0.7176 13 6 5.6909 2.3354 -1.4294 14 1 4.8825 3.0282 -1.2480 15 6 6.9754 2.8051 -1.6040 16 7 7.2163 4.0968 -1.5491 17 14 8.3737 1.6067 -1.9172 18 1 8.5205 1.3884 -3.3787 19 1 9.6364 2.1657 -1.3708 20 1 8.0758 0.3134 -1.2510 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 3.8487 0.5344 0.8162 27 1 3.9782 2.1719 0.1308 28 1 4.2281 -1.3502 -0.5748 29 1 2.6055 -0.9727 -1.2021 30 1 3.5079 -0.8488 -3.4989 31 1 3.8815 -2.4295 -2.7698 32 1 7.0377 -1.5553 -4.3172 33 1 5.4531 -1.1813 -5.0364 34 1 5.7217 -2.7515 -4.2423 35 1 6.8907 0.4688 -3.0139 36 1 5.2680 0.8465 -3.6416 37 1 8.1200 4.4273 -1.6716 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219610308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:31 Heat of formation + Delta-G solvation = -18.787473 kcal Electronic energy + Delta-G solvation = -17173.258694 eV Core-core repulsion = 14565.448890 eV Total energy + Delta-G solvation = -2607.809804 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.79539 -37.40689 -34.77110 -32.81486 -30.29176 -29.98415 -27.02921 -25.72929 -25.24772 -23.14678 -21.66443 -20.79625 -18.87317 -16.90460 -16.26102 -15.94722 -15.19683 -14.88042 -14.45540 -14.18709 -13.86855 -13.84249 -13.41227 -12.98183 -12.52456 -11.88352 -11.84094 -11.64348 -11.39317 -11.35473 -11.11053 -10.88062 -10.58568 -10.40916 -10.11683 -10.05249 -9.48522 -9.15346 -9.06215 -8.57294 -7.76199 -7.27651 -6.11097 -4.10652 3.25592 3.38094 3.45422 4.10104 4.37934 4.59152 4.79885 5.22125 5.37462 5.46094 5.56231 5.64344 5.71848 5.72930 5.75839 5.82436 5.88044 5.98742 6.06763 6.15438 6.29212 6.36659 6.47094 6.58149 6.60234 6.65025 6.88043 7.22986 7.42078 7.45910 7.62453 7.75013 8.00640 8.14161 8.65021 8.94149 9.50980 11.00950 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.010511 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.083841 B = 2663.309806 C = 3611.286353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.066 3.934 4 C 0.061 3.939 5 N -0.524 5.524 6 C 0.050 3.950 7 C 0.062 3.938 8 N -0.553 5.553 9 C 0.026 3.974 10 C 0.058 3.942 11 C 0.190 3.810 12 H 0.007 0.993 13 C -0.510 4.510 14 H 0.085 0.915 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.877 3.123 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.259 1.259 21 H 0.038 0.962 22 H 0.078 0.922 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.029 0.971 27 H 0.110 0.890 28 H 0.026 0.974 29 H 0.096 0.904 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.803 -9.029 0.038 12.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.010 4.010 4 C -0.067 4.067 5 N -0.249 5.249 6 C -0.078 4.078 7 C -0.066 4.066 8 N -0.278 5.278 9 C -0.123 4.123 10 C -0.070 4.070 11 C 0.082 3.918 12 H 0.025 0.975 13 C -0.548 4.548 14 H 0.103 0.897 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.706 3.294 18 H -0.206 1.206 19 H -0.222 1.222 20 H -0.183 1.183 21 H 0.056 0.944 22 H 0.096 0.904 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.128 0.872 28 H 0.044 0.956 29 H 0.114 0.886 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.543 -9.049 0.028 12.445 hybrid contribution 0.718 -0.303 -0.376 0.865 sum -7.826 -9.352 -0.348 12.199 Atomic orbital electron populations 1.22660 0.82493 1.01932 0.99547 1.87916 1.18578 1.29085 1.95091 1.22761 0.94708 0.83854 0.99702 1.22141 0.91560 1.02382 0.90598 1.62016 1.19131 1.12039 1.31747 1.22398 1.01441 0.89026 0.94928 1.22109 0.87823 0.99046 0.97648 1.62289 1.16703 1.16847 1.31978 1.22308 1.00485 0.99133 0.90366 1.22735 0.99338 0.84462 1.00423 1.19705 0.84037 0.96537 0.91482 0.97503 1.20986 0.94894 0.89556 1.49382 0.89733 1.24920 0.98446 0.94945 0.94626 1.69871 1.21204 1.12450 1.49861 0.87003 0.81724 0.82198 0.78429 1.20648 1.22244 1.18315 0.94375 0.90363 0.94687 0.93721 0.92536 0.95252 0.87181 0.95598 0.88634 0.94745 0.91669 0.92088 0.96053 0.92125 0.92176 0.94137 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.39 -6.04 7.73 -35.23 -0.27 -6.31 16 3 C 0.07 1.08 6.23 37.16 0.23 1.31 16 4 C 0.06 1.21 5.33 -3.82 -0.02 1.19 16 5 N -0.52 -11.34 4.46 -227.88 -1.02 -12.36 16 6 C 0.05 0.97 5.28 -3.77 -0.02 0.95 16 7 C 0.06 1.12 5.62 -3.77 -0.02 1.10 16 8 N -0.55 -11.17 4.97 -242.75 -1.21 -12.38 16 9 C 0.03 0.43 9.60 60.07 0.58 1.00 16 10 C 0.06 1.34 4.36 -3.77 -0.02 1.33 16 11 C 0.19 4.67 1.54 -68.81 -0.11 4.57 16 12 H 0.01 0.19 7.20 -51.93 -0.37 -0.18 16 13 C -0.51 -14.10 8.27 -34.44 -0.28 -14.39 16 14 H 0.08 2.49 6.85 -52.49 -0.36 2.14 16 15 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 16 N -0.90 -26.91 13.96 55.43 0.77 -26.13 16 17 Si 0.88 22.01 24.36 -169.99 -4.14 17.87 16 18 H -0.28 -6.85 6.88 56.52 0.39 -6.46 16 19 H -0.30 -7.38 7.11 56.52 0.40 -6.97 16 20 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 21 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.58 8.03 -51.93 -0.42 0.16 16 27 H 0.11 2.37 5.87 -51.93 -0.30 2.06 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.10 1.71 5.26 -51.93 -0.27 1.43 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 35 H 0.06 1.46 3.31 -51.93 -0.17 1.29 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 281.21 15.07 4.24 4.24 Total: -1.00 -30.25 281.21 -6.42 -36.68 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.15 Total: -2.10 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 1.36 Total: 0.50 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -1.45 Total: -50.87 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.27 Total: -6.31 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.25 -6.42 -36.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219610308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.889 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds