Wall clock time and date at job start Mon Mar 30 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00017 * 2 1 4 4 C 1.53002 * 109.47053 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47694 * 67.34445 * 4 3 2 6 6 C 1.46962 * 110.99819 * 286.51017 * 5 4 3 7 7 C 1.53047 * 109.36441 * 176.80800 * 6 5 4 8 8 N 1.46957 * 109.36392 * 58.39962 * 7 6 5 9 9 C 1.46906 * 111.00184 * 176.80937 * 8 7 6 10 10 C 1.46956 * 110.88231 * 300.68355 * 8 7 6 11 11 C 1.46955 * 111.00151 * 162.71136 * 5 4 3 12 12 H 1.08993 * 109.50792 * 63.21318 * 11 5 4 13 13 C 1.50701 * 109.48498 * 303.15321 * 11 5 4 14 14 H 1.08000 * 120.00432 * 0.10989 * 13 11 5 15 15 C 1.37878 * 119.99532 * 180.11179 * 13 11 5 16 16 N 1.31514 * 120.00062 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 120.00144 * 359.97438 * 15 13 11 18 18 H 1.48504 * 109.47039 * 90.00156 * 17 15 13 19 19 H 1.48504 * 109.47117 * 209.99945 * 17 15 13 20 20 H 1.48495 * 109.47252 * 330.00192 * 17 15 13 21 21 H 1.09000 * 109.47168 * 60.00211 * 1 2 3 22 22 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47338 * 300.00514 * 1 2 3 24 24 H 1.08998 * 109.47593 * 59.99493 * 3 2 1 25 25 H 1.09003 * 109.47007 * 299.99738 * 3 2 1 26 26 H 1.09003 * 109.46735 * 307.33984 * 4 3 2 27 27 H 1.09003 * 109.47277 * 187.34767 * 4 3 2 28 28 H 1.08994 * 109.48874 * 296.77562 * 6 5 4 29 29 H 1.09004 * 109.48622 * 56.81972 * 6 5 4 30 30 H 1.09006 * 109.49312 * 298.43752 * 7 6 5 31 31 H 1.08997 * 109.49080 * 178.37197 * 7 6 5 32 32 H 1.08996 * 109.46977 * 183.79783 * 9 8 7 33 33 H 1.08998 * 109.46468 * 63.80451 * 9 8 7 34 34 H 1.08996 * 109.46831 * 303.80612 * 9 8 7 35 35 H 1.09001 * 109.48726 * 179.28845 * 10 8 7 36 36 H 1.09004 * 109.48696 * 299.34895 * 10 8 7 37 37 H 0.96997 * 120.00232 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9810 0.6144 -1.2790 6 6 3.6747 -0.8212 -1.3506 7 6 4.0811 -1.3589 -2.7246 8 7 5.5151 -1.1181 -2.9374 9 6 5.9607 -1.6884 -4.2158 10 6 5.8215 0.3174 -2.8658 11 6 5.4150 0.8551 -1.4917 12 1 5.9885 0.3453 -0.7176 13 6 5.6909 2.3354 -1.4294 14 1 4.8825 3.0282 -1.2480 15 6 6.9754 2.8051 -1.6040 16 7 7.2163 4.0968 -1.5491 17 14 8.3737 1.6067 -1.9172 18 1 8.5205 1.3884 -3.3787 19 1 9.6364 2.1657 -1.3708 20 1 8.0758 0.3134 -1.2510 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6885 1.8464 0.8899 25 1 1.6886 1.8463 -0.8900 26 1 3.8487 0.5344 0.8162 27 1 3.9782 2.1719 0.1308 28 1 4.2281 -1.3502 -0.5748 29 1 2.6055 -0.9727 -1.2021 30 1 3.5079 -0.8488 -3.4989 31 1 3.8815 -2.4295 -2.7698 32 1 7.0377 -1.5553 -4.3172 33 1 5.4531 -1.1813 -5.0364 34 1 5.7217 -2.7515 -4.2423 35 1 6.8907 0.4688 -3.0139 36 1 5.2680 0.8465 -3.6416 37 1 8.1200 4.4273 -1.6716 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219610308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:30 Heat of formation + Delta-G solvation = -43.099262 kcal Electronic energy + Delta-G solvation = -17174.312932 eV Core-core repulsion = 14565.448890 eV Total energy + Delta-G solvation = -2608.864042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.40869 -38.66855 -36.34284 -34.87705 -32.18011 -31.39994 -28.34301 -27.20449 -26.85682 -24.65519 -23.39011 -22.38749 -20.60132 -18.98670 -17.71726 -17.29810 -16.59737 -16.35492 -15.97228 -15.79314 -15.67835 -15.46116 -14.86813 -14.70934 -14.18594 -13.48914 -13.14678 -13.12256 -13.00581 -12.85001 -12.50853 -12.45387 -12.31448 -12.11898 -11.95980 -11.67247 -11.24730 -11.07026 -10.74027 -10.39058 -9.32317 -9.01380 -8.32649 -6.35710 1.24589 1.33102 1.44671 2.27651 2.89131 2.99908 3.10993 3.22381 4.08426 4.16206 4.21884 4.35500 4.36694 4.45483 4.51562 4.60002 4.63102 4.63735 4.68370 4.72279 4.81747 4.90927 4.91006 4.93244 5.02423 5.07583 5.25941 5.35975 5.51278 5.98129 6.06994 6.12591 6.31711 6.42392 6.68891 6.72004 7.29538 8.82715 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.010511 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.083841 B = 2663.309806 C = 3611.286353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.080 3.920 4 C 0.061 3.939 5 N -0.534 5.534 6 C 0.053 3.947 7 C 0.063 3.937 8 N -0.566 5.566 9 C 0.024 3.976 10 C 0.066 3.934 11 C 0.196 3.804 12 H -0.014 1.014 13 C -0.508 4.508 14 H 0.053 0.947 15 C 0.023 3.977 16 N -0.938 5.938 17 Si 0.936 3.064 18 H -0.267 1.267 19 H -0.292 1.292 20 H -0.257 1.257 21 H 0.043 0.957 22 H 0.098 0.902 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.027 0.973 27 H 0.081 0.919 28 H 0.016 0.984 29 H 0.113 0.887 30 H 0.033 0.967 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.026 0.974 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 -11.417 -0.515 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.003 3.997 4 C -0.067 4.067 5 N -0.259 5.259 6 C -0.074 4.074 7 C -0.065 4.065 8 N -0.291 5.291 9 C -0.124 4.124 10 C -0.062 4.062 11 C 0.087 3.913 12 H 0.004 0.996 13 C -0.547 4.547 14 H 0.071 0.929 15 C -0.176 4.176 16 N -0.578 5.578 17 Si 0.763 3.237 18 H -0.193 1.193 19 H -0.219 1.219 20 H -0.181 1.181 21 H 0.061 0.939 22 H 0.117 0.883 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.099 0.901 28 H 0.034 0.966 29 H 0.131 0.869 30 H 0.052 0.948 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.480 -11.459 -0.532 14.881 hybrid contribution 0.860 0.427 -0.158 0.973 sum -8.620 -11.031 -0.690 14.017 Atomic orbital electron populations 1.22895 0.80028 1.03651 1.00512 1.87837 1.21111 1.28248 1.95258 1.22481 0.92088 0.84609 1.00512 1.22088 0.94246 1.00548 0.89860 1.62044 1.16961 1.14090 1.32772 1.22476 1.02328 0.87064 0.95573 1.22212 0.86567 1.01107 0.96594 1.62257 1.18150 1.14288 1.34377 1.22419 1.00499 1.00806 0.88657 1.22414 0.98328 0.86826 0.98630 1.19466 0.85850 0.94054 0.91884 0.99644 1.21168 0.94118 0.91101 1.48288 0.92891 1.25631 1.00894 0.96347 0.94679 1.69991 1.21933 1.14252 1.51645 0.86043 0.78699 0.80009 0.78921 1.19296 1.21925 1.18132 0.93858 0.88316 0.93265 0.91475 0.93138 0.95501 0.90067 0.96576 0.86940 0.94831 0.88094 0.92135 0.95502 0.88898 0.93246 0.95558 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.40 -11.71 7.73 -148.98 -1.15 -12.86 16 3 C 0.08 2.51 6.23 71.98 0.45 2.96 16 4 C 0.06 2.42 5.33 86.30 0.46 2.88 16 5 N -0.53 -23.08 4.46 -874.89 -3.91 -26.98 16 6 C 0.05 1.95 5.28 86.31 0.46 2.40 16 7 C 0.06 2.09 5.62 86.31 0.49 2.58 16 8 N -0.57 -21.50 4.97 -921.94 -4.58 -26.08 16 9 C 0.02 0.72 9.60 127.69 1.23 1.94 16 10 C 0.07 3.03 4.36 86.31 0.38 3.41 16 11 C 0.20 9.74 1.54 44.17 0.07 9.80 16 12 H -0.01 -0.74 7.20 -2.39 -0.02 -0.76 16 13 C -0.51 -29.08 8.27 25.60 0.21 -28.87 16 14 H 0.05 3.30 6.85 -2.91 -0.02 3.28 16 15 C 0.02 1.35 5.45 84.65 0.46 1.81 16 16 N -0.94 -57.97 13.96 21.45 0.30 -57.67 16 17 Si 0.94 45.98 24.36 68.60 1.67 47.65 16 18 H -0.27 -12.47 6.88 99.48 0.68 -11.79 16 19 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 20 H -0.26 -12.44 6.53 99.48 0.65 -11.79 16 21 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.03 1.06 8.03 -2.39 -0.02 1.05 16 27 H 0.08 3.68 5.87 -2.39 -0.01 3.66 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.11 3.74 5.26 -2.38 -0.01 3.73 16 30 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.10 2.67 8.13 -2.39 -0.02 2.65 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 2.18 8.13 -2.39 -0.02 2.16 16 35 H 0.05 2.35 3.31 -2.39 -0.01 2.35 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -66.01 281.21 -1.28 -67.29 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.95 Total: 8.00 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.44 Total: 0.66 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -8.19 Total: -110.73 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -1.15 Total: -12.86 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.67 Total: 47.65 kcal Total: -66.01 -1.28 -67.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219610308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.186 kcal (2) G-P(sol) polarization free energy of solvation -66.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds