Wall clock time and date at job start Mon Mar 30 2020 03:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99966 * 2 1 4 4 C 1.53001 * 109.47341 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47357 * 64.34214 * 4 3 2 6 6 C 1.47909 * 110.99957 * 203.82071 * 5 4 3 7 7 C 1.50803 * 108.49485 * 153.79188 * 6 5 4 8 8 C 1.53702 * 112.09900 * 92.55343 * 7 6 5 9 9 N 1.48068 * 112.46678 * 318.55066 * 8 7 6 10 10 C 1.44572 * 113.85807 * 318.31393 * 9 8 7 11 11 H 1.08998 * 109.57681 * 334.42945 * 10 9 8 12 12 C 1.50696 * 109.58037 * 214.04219 * 10 9 8 13 13 H 1.08005 * 120.00021 * 275.83223 * 12 10 9 14 14 C 1.37875 * 120.00064 * 95.82277 * 12 10 9 15 15 N 1.31510 * 120.00105 * 175.04950 * 14 12 10 16 16 Si 1.86799 * 120.00010 * 355.05320 * 14 12 10 17 17 H 1.48499 * 109.47495 * 94.76407 * 16 14 12 18 18 H 1.48495 * 109.47265 * 214.76628 * 16 14 12 19 19 H 1.48505 * 109.47294 * 334.76525 * 16 14 12 20 20 C 1.40017 * 110.99600 * 75.85468 * 5 4 3 21 21 H 1.08997 * 109.46897 * 60.00489 * 1 2 3 22 22 H 1.09005 * 109.47002 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47161 * 300.00032 * 1 2 3 24 24 H 1.08999 * 109.46966 * 299.99762 * 3 2 1 25 25 H 1.08999 * 109.47438 * 59.99829 * 3 2 1 26 26 H 1.09000 * 109.47339 * 184.35058 * 4 3 2 27 27 H 1.09007 * 109.46934 * 304.34670 * 4 3 2 28 28 H 1.08996 * 109.63087 * 273.49578 * 6 5 4 29 29 H 1.09005 * 109.63228 * 34.09098 * 6 5 4 30 30 H 1.08996 * 108.95660 * 331.87778 * 7 6 5 31 31 H 1.08996 * 108.88408 * 213.17689 * 7 6 5 32 32 H 1.08998 * 108.87946 * 197.78392 * 8 7 6 33 33 H 1.08991 * 108.80339 * 79.26458 * 8 7 6 34 34 H 1.00901 * 111.00262 * 84.43833 * 9 8 7 35 35 H 0.97004 * 120.00168 * 180.02562 * 15 14 12 36 36 H 1.09001 * 108.95839 * 308.76513 * 20 5 4 37 37 H 1.09004 * 108.95791 * 67.42379 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5484 -1.2494 6 6 5.2969 -0.0946 -1.0794 7 6 5.4126 -1.2207 -2.0758 8 6 6.0747 -0.7672 -3.3866 9 7 5.5998 0.5635 -3.8296 10 6 4.1757 0.7578 -3.6738 11 1 3.6708 -0.2080 -3.6955 12 6 3.6591 1.6257 -4.7922 13 1 3.7215 2.7011 -4.7142 14 6 3.1069 1.0469 -5.9152 15 7 2.5682 1.8024 -6.8471 16 14 3.1239 -0.8105 -6.1130 17 1 1.8409 -1.3727 -5.6199 18 1 3.2961 -1.1541 -7.5474 19 1 4.2483 -1.3816 -5.3288 20 6 3.9122 1.4481 -2.3204 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.6886 1.8463 -0.8900 25 1 1.6886 1.8464 0.8899 26 1 3.9786 2.1775 0.0773 27 1 3.8522 0.5778 0.8477 28 1 6.0856 0.6359 -1.2591 29 1 5.3841 -0.4905 -0.0675 30 1 4.4157 -1.6022 -2.2962 31 1 6.0085 -2.0206 -1.6364 32 1 5.8534 -1.4977 -4.1647 33 1 7.1538 -0.7254 -3.2391 34 1 6.1172 1.3016 -3.3761 35 1 2.1793 1.3952 -7.6370 36 1 2.9222 1.9036 -2.3419 37 1 4.6568 2.2300 -2.1708 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219610757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:26 Heat of formation + Delta-G solvation = -28.686465 kcal Electronic energy + Delta-G solvation = -17129.510097 eV Core-core repulsion = 14521.271041 eV Total energy + Delta-G solvation = -2608.239056 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.14775 -37.39734 -34.68013 -32.88219 -31.27207 -29.74156 -26.86078 -25.90245 -25.30840 -23.72866 -21.42564 -20.07323 -19.31123 -17.05203 -16.21714 -16.08826 -15.15477 -14.86222 -14.66984 -14.50579 -14.13868 -13.96893 -13.17688 -12.70329 -12.47455 -12.15517 -12.04960 -11.56698 -11.39349 -11.21319 -11.02808 -10.94231 -10.70773 -10.32663 -10.25411 -9.77570 -9.54829 -9.38173 -8.97891 -8.47382 -7.69703 -7.10132 -5.98502 -3.99575 3.42079 3.49664 3.59227 4.01958 4.29849 4.57303 5.07716 5.20976 5.26561 5.41639 5.43246 5.52807 5.54930 5.61467 5.64297 5.73487 5.83853 5.86325 5.93708 5.96979 6.05898 6.10559 6.22063 6.45393 6.66097 6.71195 6.84566 6.94079 7.39295 7.60702 7.77610 7.96892 8.28440 8.59270 8.73393 9.06256 9.67500 11.13885 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.010512 C = 0.008572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.175282 B = 2663.108631 C = 3265.597490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.065 3.935 4 C 0.061 3.939 5 N -0.542 5.542 6 C 0.070 3.930 7 C -0.151 4.151 8 C 0.055 3.945 9 N -0.684 5.684 10 C 0.197 3.803 11 H 0.051 0.949 12 C -0.492 4.492 13 H 0.068 0.932 14 C 0.080 3.920 15 N -0.902 5.902 16 Si 0.880 3.120 17 H -0.285 1.285 18 H -0.293 1.293 19 H -0.251 1.251 20 C 0.048 3.952 21 H 0.042 0.958 22 H 0.081 0.919 23 H 0.033 0.967 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.318 0.682 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 -3.606 14.227 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.012 4.012 4 C -0.066 4.066 5 N -0.267 5.267 6 C -0.057 4.057 7 C -0.191 4.191 8 C -0.075 4.075 9 N -0.314 5.314 10 C 0.089 3.911 11 H 0.069 0.931 12 C -0.532 4.532 13 H 0.086 0.914 14 C -0.123 4.123 15 N -0.540 5.540 16 Si 0.708 3.292 17 H -0.211 1.211 18 H -0.220 1.220 19 H -0.176 1.176 20 C -0.083 4.083 21 H 0.060 0.940 22 H 0.099 0.901 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.136 0.864 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 0.884 -4.327 13.293 14.008 hybrid contribution 0.200 0.098 0.879 0.906 sum 1.084 -4.229 14.172 14.829 Atomic orbital electron populations 1.22698 0.82011 1.02320 0.99544 1.87969 1.18649 1.27420 1.95219 1.22597 0.93793 0.85078 0.99718 1.22084 0.93707 0.97766 0.93081 1.59227 1.27306 1.36416 1.03717 1.21774 0.89013 0.96242 0.98652 1.22030 1.02527 0.97684 0.96899 1.22419 0.97271 0.93794 0.94019 1.60407 1.07696 1.01187 1.62150 1.19448 0.84697 0.96523 0.90431 0.93125 1.20790 1.37298 0.94027 1.01051 0.91386 1.24975 0.93884 0.98130 0.95302 1.69923 1.38675 1.35598 1.09809 0.86814 0.78810 0.86484 0.77065 1.21116 1.21978 1.17552 1.21937 1.00780 0.92962 0.92626 0.93970 0.90060 0.94879 0.92643 0.93803 0.93672 0.90848 0.94999 0.91711 0.90756 0.92596 0.91918 0.93215 0.86368 0.92834 0.90816 0.97633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.07 10.64 -35.23 -0.37 -6.44 16 3 C 0.07 0.95 6.10 37.16 0.23 1.18 16 4 C 0.06 0.90 5.42 -3.82 -0.02 0.88 16 5 N -0.54 -9.66 3.95 -239.74 -0.95 -10.61 16 6 C 0.07 1.12 5.34 -4.37 -0.02 1.09 16 7 C -0.15 -2.54 5.36 -27.47 -0.15 -2.69 16 8 C 0.05 1.02 6.31 -2.81 -0.02 1.00 16 9 N -0.68 -14.83 6.11 -107.60 -0.66 -15.48 16 10 C 0.20 4.67 1.59 -69.49 -0.11 4.56 16 11 H 0.05 1.28 4.37 -51.93 -0.23 1.06 16 12 C -0.49 -13.94 9.10 -34.44 -0.31 -14.26 16 13 H 0.07 2.08 8.06 -52.48 -0.42 1.66 16 14 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 15 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 16 Si 0.88 22.54 27.07 -169.99 -4.60 17.93 16 17 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 19 H -0.25 -6.18 5.08 56.52 0.29 -5.89 16 20 C 0.05 0.98 4.16 -6.75 -0.03 0.95 16 21 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.88 6.61 -51.93 -0.34 0.54 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.62 7.97 -51.93 -0.41 0.20 16 27 H 0.07 0.98 7.46 -51.93 -0.39 0.59 16 28 H 0.03 0.50 7.13 -51.93 -0.37 0.13 16 29 H 0.06 0.90 7.45 -51.93 -0.39 0.51 16 30 H 0.07 1.43 7.23 -51.93 -0.38 1.06 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.26 6.67 -51.93 -0.35 0.91 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.32 6.43 7.50 -39.29 -0.29 6.14 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.07 1.60 6.25 -51.93 -0.32 1.27 16 37 H 0.01 0.12 7.57 -51.93 -0.39 -0.28 16 LS Contribution 282.32 15.07 4.25 4.25 Total: -1.00 -31.41 282.32 -7.04 -38.45 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.07 Total: 2.63 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 0.58 Total: -3.53 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.83 Total: -53.29 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.37 Total: -6.44 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.60 Total: 17.93 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.41 -7.04 -38.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219610757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.764 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds