Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99889 * 2 1 4 4 H 1.09005 * 109.57748 * 330.15988 * 3 2 1 5 5 C 1.53122 * 109.52273 * 90.31533 * 3 2 1 6 6 C 1.53032 * 109.27986 * 177.56055 * 5 3 2 7 7 N 1.46850 * 109.52501 * 300.82485 * 6 5 3 8 8 C 1.46896 * 111.00574 * 185.83923 * 7 6 5 9 9 C 1.50710 * 109.46875 * 47.97677 * 8 7 6 10 10 H 1.07995 * 119.99880 * 5.35505 * 9 8 7 11 11 C 1.37871 * 119.99954 * 185.35794 * 9 8 7 12 12 N 1.31520 * 120.00059 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00219 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47124 * 89.99446 * 13 11 9 15 15 H 1.48493 * 109.47597 * 209.99947 * 13 11 9 16 16 H 1.48506 * 109.46999 * 330.00208 * 13 11 9 17 17 C 1.46844 * 111.20003 * 61.73559 * 7 6 5 18 18 H 1.09005 * 109.45205 * 58.27715 * 17 7 6 19 19 C 1.53003 * 109.46451 * 178.24322 * 17 7 6 20 20 N 1.46899 * 109.47214 * 294.65786 * 19 17 7 21 21 C 1.53033 * 109.52726 * 298.26541 * 17 7 6 22 22 H 1.08995 * 109.46869 * 299.99958 * 1 2 3 23 23 H 1.08997 * 109.46836 * 60.00302 * 1 2 3 24 24 H 1.09006 * 109.46788 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.49987 * 297.50144 * 5 3 2 26 26 H 1.08997 * 109.50024 * 57.62128 * 5 3 2 27 27 H 1.09007 * 109.46431 * 60.83664 * 6 5 3 28 28 H 1.08993 * 109.46458 * 180.80711 * 6 5 3 29 29 H 1.08995 * 109.47679 * 167.97440 * 8 7 6 30 30 H 1.09003 * 109.47168 * 287.98184 * 8 7 6 31 31 H 0.97005 * 119.99707 * 180.02562 * 12 11 9 32 32 H 1.08999 * 109.46627 * 54.65898 * 19 17 7 33 33 H 1.09002 * 109.47364 * 174.65618 * 19 17 7 34 34 H 1.00899 * 110.99583 * 179.97438 * 20 19 17 35 35 H 1.00900 * 110.99907 * 303.95189 * 20 19 17 36 36 H 1.08999 * 109.50601 * 179.11633 * 21 17 7 37 37 H 1.09004 * 109.50455 * 299.23580 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0014 -0.5110 5 6 2.2256 1.7697 1.4432 6 6 2.9037 3.1416 1.4368 7 7 4.1909 3.0496 0.7359 8 6 4.9331 4.3138 0.8299 9 6 4.9382 4.7881 2.2604 10 1 4.5158 4.1673 3.0366 11 6 5.4820 6.0146 2.5780 12 7 5.9967 6.7704 1.6327 13 14 5.4890 6.6023 4.3511 14 1 6.7388 6.1541 5.0162 15 1 5.4164 8.0852 4.3815 16 1 4.3172 6.0347 5.0654 17 6 4.0053 2.6512 -0.6652 18 1 3.3595 3.3729 -1.1654 19 6 5.3639 2.6103 -1.3678 20 7 5.9251 3.9665 -1.4278 21 6 3.3601 1.2646 -0.7216 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.2632 1.8418 1.9497 26 1 2.8595 1.0529 1.9652 27 1 2.2630 3.8610 0.9266 28 1 3.0714 3.4686 2.4629 29 1 5.9586 4.1588 0.4949 30 1 4.4545 5.0638 0.2001 31 1 6.3796 7.6332 1.8563 32 1 6.0407 1.9611 -0.8123 33 1 5.2384 2.2239 -2.3793 34 1 6.8234 3.9660 -1.8875 35 1 5.2866 4.6023 -1.8818 36 1 3.2082 0.9759 -1.7616 37 1 4.0118 0.5398 -0.2336 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226420613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = -31.581724 kcal Electronic energy + Delta-G solvation = -16939.151261 eV Core-core repulsion = 14330.786657 eV Total energy + Delta-G solvation = -2608.364604 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.15049 -37.11777 -33.83370 -32.99531 -31.18476 -29.95136 -27.21096 -25.95449 -24.42845 -23.24135 -21.19800 -20.57959 -19.22914 -16.38566 -16.15633 -15.44032 -15.17770 -15.02157 -14.59847 -14.46436 -13.87220 -13.58314 -13.22991 -12.65876 -12.26095 -11.94254 -11.89464 -11.59148 -11.33868 -11.04437 -10.79805 -10.66858 -10.49276 -10.45234 -10.17219 -10.04140 -9.62319 -9.29184 -8.91800 -8.33143 -7.46212 -6.94993 -5.83408 -3.82739 3.39552 3.45500 3.48366 3.87565 4.54830 4.90401 5.04248 5.18686 5.22725 5.36019 5.39495 5.48351 5.51039 5.62622 5.68450 5.82977 5.85380 5.92541 6.03049 6.15189 6.27770 6.32175 6.41898 6.63036 6.83506 6.90175 7.37965 7.67413 7.77247 7.85346 7.97471 8.00310 8.44719 8.60249 8.85492 9.28680 9.78268 11.25839 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.029155 B = 0.007909 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.162339 B = 3539.225896 C = 4353.504867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.091 3.909 4 H 0.052 0.948 5 C -0.137 4.137 6 C 0.063 3.937 7 N -0.529 5.529 8 C 0.192 3.808 9 C -0.517 4.517 10 H 0.058 0.942 11 C 0.057 3.943 12 N -0.891 5.891 13 Si 0.887 3.113 14 H -0.282 1.282 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.089 3.911 18 H 0.025 0.975 19 C 0.074 3.926 20 N -0.822 5.822 21 C -0.104 4.104 22 H 0.039 0.961 23 H 0.036 0.964 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.015 0.985 28 H 0.093 0.907 29 H 0.085 0.915 30 H -0.012 1.012 31 H 0.256 0.744 32 H 0.078 0.922 33 H 0.016 0.984 34 H 0.330 0.670 35 H 0.335 0.665 36 H 0.060 0.940 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.272 -9.457 -6.382 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.033 3.967 4 H 0.070 0.930 5 C -0.176 4.176 6 C -0.065 4.065 7 N -0.254 5.254 8 C 0.067 3.933 9 C -0.556 4.556 10 H 0.076 0.924 11 C -0.143 4.143 12 N -0.531 5.531 13 Si 0.715 3.285 14 H -0.208 1.208 15 H -0.216 1.216 16 H -0.202 1.202 17 C -0.021 4.021 18 H 0.042 0.958 19 C -0.057 4.057 20 N -0.351 5.351 21 C -0.143 4.143 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.033 0.967 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.006 0.994 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.034 0.966 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.078 0.922 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.792 -9.830 -5.394 13.110 hybrid contribution -0.863 1.232 -0.426 1.563 sum -7.655 -8.598 -5.820 12.900 Atomic orbital electron populations 1.22714 0.81875 1.02098 0.99736 1.87890 1.18995 1.28739 1.95154 1.22235 0.94479 0.83375 0.96564 0.93028 1.22162 1.00161 0.99286 0.95961 1.21981 0.90105 0.92786 1.01677 1.62216 1.17151 1.37183 1.08899 1.20207 0.96328 0.81995 0.94752 1.21516 1.38067 1.01878 0.94130 0.92438 1.24910 0.95971 0.96844 0.96621 1.70000 1.40142 1.11300 1.31627 0.86694 0.78283 0.77602 0.85916 1.20823 1.21555 1.20191 1.21484 0.94558 0.94080 0.91973 0.95754 1.21732 0.96134 0.91296 0.96515 1.59282 1.07004 1.07663 1.61166 1.21626 0.95057 0.98230 0.99358 0.94195 0.94498 0.90114 0.92698 0.90676 0.96694 0.88843 0.89787 0.99447 0.93456 0.90396 0.96578 0.85772 0.85174 0.92161 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 101.05 1.09 1.46 16 2 O -0.39 -5.82 10.35 -35.23 -0.36 -6.18 16 3 C 0.09 1.42 2.68 -26.61 -0.07 1.35 16 4 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 5 C -0.14 -2.33 5.72 -26.65 -0.15 -2.48 16 6 C 0.06 1.29 5.11 -3.83 -0.02 1.27 16 7 N -0.53 -11.51 4.62 -228.12 -1.05 -12.56 16 8 C 0.19 4.96 3.49 -4.97 -0.02 4.95 16 9 C -0.52 -14.69 8.29 -34.44 -0.29 -14.97 16 10 H 0.06 1.62 6.07 -52.49 -0.32 1.30 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 13 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.09 1.61 2.18 -67.72 -0.15 1.46 16 18 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 19 C 0.07 1.23 6.09 -3.82 -0.02 1.21 16 20 N -0.82 -14.56 5.82 -10.37 -0.06 -14.62 16 21 C -0.10 -1.64 5.03 -26.65 -0.13 -1.78 16 22 H 0.04 0.43 7.96 -51.93 -0.41 0.01 16 23 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.84 7.96 -51.93 -0.41 0.42 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 28 H 0.09 2.10 5.68 -51.93 -0.30 1.81 16 29 H 0.08 2.30 5.73 -51.93 -0.30 2.00 16 30 H -0.01 -0.35 7.74 -51.93 -0.40 -0.75 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.33 5.04 9.08 -39.29 -0.36 4.69 16 35 H 0.34 5.80 8.81 -39.29 -0.35 5.45 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 288.15 15.07 4.34 4.34 Total: -1.00 -30.71 288.15 -7.46 -38.17 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.18 Total: 5.76 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 0.15 Total: -5.99 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.38 Total: -53.08 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.36 Total: -6.18 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.71 -7.46 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226420613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.584 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds