Wall clock time and date at job start Mon Mar 30 2020 03:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99889 * 2 1 4 4 H 1.09005 * 109.57748 * 330.15988 * 3 2 1 5 5 C 1.53122 * 109.52273 * 90.31533 * 3 2 1 6 6 C 1.53032 * 109.27986 * 177.56055 * 5 3 2 7 7 N 1.46850 * 109.52501 * 300.82485 * 6 5 3 8 8 C 1.46896 * 111.00574 * 185.83923 * 7 6 5 9 9 C 1.50710 * 109.46875 * 47.97677 * 8 7 6 10 10 H 1.07995 * 119.99880 * 5.35505 * 9 8 7 11 11 C 1.37871 * 119.99954 * 185.35794 * 9 8 7 12 12 N 1.31520 * 120.00059 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00219 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47124 * 89.99446 * 13 11 9 15 15 H 1.48493 * 109.47597 * 209.99947 * 13 11 9 16 16 H 1.48506 * 109.46999 * 330.00208 * 13 11 9 17 17 C 1.46844 * 111.20003 * 61.73559 * 7 6 5 18 18 H 1.09005 * 109.45205 * 58.27715 * 17 7 6 19 19 C 1.53003 * 109.46451 * 178.24322 * 17 7 6 20 20 N 1.46899 * 109.47214 * 294.65786 * 19 17 7 21 21 C 1.53033 * 109.52726 * 298.26541 * 17 7 6 22 22 H 1.08995 * 109.46869 * 299.99958 * 1 2 3 23 23 H 1.08997 * 109.46836 * 60.00302 * 1 2 3 24 24 H 1.09006 * 109.46788 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.49987 * 297.50144 * 5 3 2 26 26 H 1.08997 * 109.50024 * 57.62128 * 5 3 2 27 27 H 1.09007 * 109.46431 * 60.83664 * 6 5 3 28 28 H 1.08993 * 109.46458 * 180.80711 * 6 5 3 29 29 H 1.08995 * 109.47679 * 167.97440 * 8 7 6 30 30 H 1.09003 * 109.47168 * 287.98184 * 8 7 6 31 31 H 0.97005 * 119.99707 * 180.02562 * 12 11 9 32 32 H 1.08999 * 109.46627 * 54.65898 * 19 17 7 33 33 H 1.09002 * 109.47364 * 174.65618 * 19 17 7 34 34 H 1.00899 * 110.99583 * 179.97438 * 20 19 17 35 35 H 1.00900 * 110.99907 * 303.95189 * 20 19 17 36 36 H 1.08999 * 109.50601 * 179.11633 * 21 17 7 37 37 H 1.09004 * 109.50455 * 299.23580 * 21 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 2.0014 -0.5110 5 6 2.2256 1.7697 1.4432 6 6 2.9037 3.1416 1.4368 7 7 4.1909 3.0496 0.7359 8 6 4.9331 4.3138 0.8299 9 6 4.9382 4.7881 2.2604 10 1 4.5158 4.1673 3.0366 11 6 5.4820 6.0146 2.5780 12 7 5.9967 6.7704 1.6327 13 14 5.4890 6.6023 4.3511 14 1 6.7388 6.1541 5.0162 15 1 5.4164 8.0852 4.3815 16 1 4.3172 6.0347 5.0654 17 6 4.0053 2.6512 -0.6652 18 1 3.3595 3.3729 -1.1654 19 6 5.3639 2.6103 -1.3678 20 7 5.9251 3.9665 -1.4278 21 6 3.3601 1.2646 -0.7216 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.2632 1.8418 1.9497 26 1 2.8595 1.0529 1.9652 27 1 2.2630 3.8610 0.9266 28 1 3.0714 3.4686 2.4629 29 1 5.9586 4.1588 0.4949 30 1 4.4545 5.0638 0.2001 31 1 6.3796 7.6332 1.8563 32 1 6.0407 1.9611 -0.8123 33 1 5.2384 2.2239 -2.3793 34 1 6.8234 3.9660 -1.8875 35 1 5.2866 4.6023 -1.8818 36 1 3.2082 0.9759 -1.7616 37 1 4.0118 0.5398 -0.2336 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226420613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:35 Heat of formation + Delta-G solvation = -55.062713 kcal Electronic energy + Delta-G solvation = -16940.169473 eV Core-core repulsion = 14330.786657 eV Total energy + Delta-G solvation = -2609.382816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55609 -38.41244 -35.30413 -34.92256 -32.91052 -31.39270 -28.78359 -27.36728 -25.88821 -24.83778 -22.97442 -21.98914 -20.72548 -18.28355 -17.58401 -16.88247 -16.58061 -16.39953 -16.19827 -15.86407 -15.40751 -14.93162 -14.84343 -14.12233 -13.99068 -13.53142 -13.36324 -13.00633 -12.82708 -12.67818 -12.51716 -12.34737 -12.05408 -11.97748 -11.82171 -11.57786 -11.29381 -11.01809 -10.50051 -10.36560 -8.99637 -8.73277 -8.03097 -6.09979 1.42027 1.43302 1.52773 2.47376 2.77475 3.27301 3.37712 3.75353 3.86719 3.94121 4.13838 4.27130 4.42388 4.45873 4.52508 4.55187 4.59221 4.61344 4.74574 4.88649 4.93216 5.00652 5.04075 5.18936 5.25518 5.36602 5.64948 5.79898 5.95520 6.28708 6.30170 6.42315 6.61771 6.71597 6.95135 7.13175 7.55796 9.05192 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.029155 B = 0.007909 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.162339 B = 3539.225896 C = 4353.504867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.096 3.904 4 H 0.059 0.941 5 C -0.127 4.127 6 C 0.066 3.934 7 N -0.537 5.537 8 C 0.213 3.787 9 C -0.536 4.536 10 H 0.054 0.946 11 C 0.006 3.994 12 N -0.921 5.921 13 Si 0.953 3.047 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.270 1.270 17 C 0.087 3.913 18 H 0.018 0.982 19 C 0.078 3.922 20 N -0.845 5.845 21 C -0.097 4.097 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.005 0.995 28 H 0.067 0.933 29 H 0.070 0.930 30 H -0.044 1.044 31 H 0.257 0.743 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.342 0.658 35 H 0.336 0.664 36 H 0.086 0.914 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 -10.680 -6.506 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.038 3.962 4 H 0.077 0.923 5 C -0.165 4.165 6 C -0.063 4.063 7 N -0.263 5.263 8 C 0.087 3.913 9 C -0.575 4.575 10 H 0.072 0.928 11 C -0.192 4.192 12 N -0.562 5.562 13 Si 0.779 3.221 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.195 1.195 17 C -0.023 4.023 18 H 0.036 0.964 19 C -0.052 4.052 20 N -0.376 5.376 21 C -0.135 4.135 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.120 0.880 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.023 0.977 28 H 0.085 0.915 29 H 0.087 0.913 30 H -0.026 1.026 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.105 0.895 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.788 -11.082 -5.524 14.628 hybrid contribution -0.602 1.574 -0.421 1.737 sum -8.390 -9.508 -5.946 14.005 Atomic orbital electron populations 1.22976 0.79863 1.03846 1.00543 1.87869 1.21185 1.27814 1.95164 1.22078 0.94722 0.84155 0.95198 0.92265 1.22040 1.00354 0.96533 0.97609 1.21899 0.89705 0.94916 0.99767 1.62131 1.17767 1.34675 1.11713 1.19798 0.95805 0.82864 0.92790 1.21898 1.37924 1.02268 0.95400 0.92804 1.25712 0.95597 0.97031 1.00850 1.70126 1.40811 1.11615 1.33657 0.85649 0.78512 0.77134 0.80850 1.20223 1.21015 1.19474 1.21625 0.95726 0.95273 0.89628 0.96440 1.21714 0.94892 0.90613 0.98019 1.59157 1.07883 1.08547 1.62017 1.21553 0.94858 0.96098 1.01010 0.93797 0.93279 0.87995 0.90848 0.91542 0.97658 0.91513 0.91287 1.02625 0.93374 0.91308 0.93073 0.84418 0.85162 0.89528 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.82 113.37 1.23 1.68 16 2 O -0.40 -10.85 10.35 -148.98 -1.54 -12.40 16 3 C 0.10 2.79 2.68 30.67 0.08 2.87 16 4 H 0.06 1.64 7.79 -2.38 -0.02 1.62 16 5 C -0.13 -4.16 5.72 30.65 0.18 -3.99 16 6 C 0.07 2.72 5.11 86.32 0.44 3.16 16 7 N -0.54 -23.65 4.62 -875.65 -4.05 -27.69 16 8 C 0.21 11.35 3.49 85.56 0.30 11.65 16 9 C -0.54 -31.10 8.29 25.60 0.21 -30.89 16 10 H 0.05 3.10 6.07 -2.91 -0.02 3.08 16 11 C 0.01 0.36 5.46 84.65 0.46 0.82 16 12 N -0.92 -55.97 13.29 21.45 0.28 -55.69 16 13 Si 0.95 45.52 29.54 68.60 2.03 47.54 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 15 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 17 C 0.09 3.07 2.18 44.94 0.10 3.17 16 18 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 19 C 0.08 2.51 6.09 86.30 0.53 3.04 16 20 N -0.85 -30.15 5.82 -186.71 -1.09 -31.23 16 21 C -0.10 -2.84 5.03 30.64 0.15 -2.69 16 22 H 0.04 0.81 7.96 -2.39 -0.02 0.79 16 23 H 0.05 0.83 8.09 -2.39 -0.02 0.81 16 24 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.07 2.11 7.96 -2.39 -0.02 2.09 16 26 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 28 H 0.07 3.08 5.68 -2.39 -0.01 3.07 16 29 H 0.07 3.89 5.73 -2.39 -0.01 3.88 16 30 H -0.04 -2.59 7.74 -2.39 -0.02 -2.60 16 31 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.34 10.45 9.08 -89.69 -0.81 9.63 16 35 H 0.34 11.79 8.81 -89.69 -0.79 11.00 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -65.98 288.15 -1.24 -67.22 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.55 Total: 23.42 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 3.68 Total: -11.18 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -4.85 Total: -114.61 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.54 Total: -12.40 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -65.98 -1.24 -67.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226420613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.156 kcal (2) G-P(sol) polarization free energy of solvation -65.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds