Wall clock time and date at job start Mon Mar 30 2020 03:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 119.99907 * 2 1 4 4 H 1.48509 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47377 * 299.99929 * 3 2 1 6 6 H 1.48499 * 109.47438 * 59.99876 * 3 2 1 7 7 C 1.37875 * 120.00109 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00096 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47306 * 179.97438 * 9 7 2 11 11 C 1.39661 * 120.00152 * 180.02562 * 10 9 7 12 12 C 1.38898 * 120.05735 * 179.97438 * 11 10 9 13 13 C 1.38315 * 119.92658 * 179.97438 * 12 11 10 14 14 F 1.35096 * 119.97685 * 179.97438 * 13 12 11 15 15 C 1.38515 * 120.03620 * 0.02562 * 13 12 11 16 16 C 1.38339 * 120.11142 * 359.97438 * 15 13 12 17 17 Cl 1.73603 * 119.96265 * 179.97438 * 16 15 13 18 18 C 1.38249 * 120.07580 * 0.02591 * 16 15 13 19 19 H 0.97005 * 120.00135 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47016 * 60.00059 * 9 7 2 21 21 H 1.09001 * 109.47038 * 300.00097 * 9 7 2 22 22 H 0.96996 * 119.99827 * 0.02562 * 10 9 7 23 23 H 1.07998 * 120.03624 * 0.25048 * 12 11 10 24 24 H 1.07999 * 119.94143 * 179.97438 * 15 13 12 25 25 H 1.08000 * 120.01978 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7375 -4.9294 0.0000 12 6 2.6391 -5.9860 -0.0005 13 6 2.1751 -7.2891 -0.0005 14 9 3.0511 -8.3175 -0.0016 15 6 0.8129 -7.5400 -0.0005 16 6 -0.0864 -6.4888 0.0000 17 17 -1.7929 -6.8077 -0.0007 18 6 0.3723 -5.1846 0.0000 19 1 -0.4850 0.8401 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 3.1566 -3.4354 0.0009 23 1 3.7012 -5.7904 0.0035 24 1 0.4523 -8.5580 -0.0010 25 1 -0.3306 -4.3646 0.0000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230004043.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:11 Heat of formation + Delta-G solvation = -38.786937 kcal Electronic energy + Delta-G solvation = -12952.469738 eV Core-core repulsion = 10291.656701 eV Total energy + Delta-G solvation = -2660.813037 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.72028 -38.98621 -36.43526 -34.93308 -32.71596 -30.21178 -29.25003 -26.55062 -23.30596 -22.38665 -21.03090 -17.89991 -16.84414 -16.15538 -15.76987 -15.42373 -14.90551 -14.79755 -14.07503 -13.65179 -13.49476 -12.91364 -12.57318 -12.27726 -11.50816 -11.27906 -11.27461 -10.94382 -10.93381 -10.81672 -10.29494 -9.54832 -9.50595 -8.66743 -8.43842 -6.94316 -6.30433 -4.36782 1.36892 1.68769 2.27042 3.16648 3.24618 3.27444 3.89960 4.04478 4.30121 4.62840 5.07317 5.24175 5.38840 5.47739 5.66663 5.97403 6.30818 6.46512 6.54975 6.84034 7.09404 7.25684 7.49166 7.80079 8.00315 8.42441 8.73612 9.30245 10.80009 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.032844 B = 0.006254 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.311638 B = 4475.959701 C = 5313.127824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.245 3.755 10 N -0.714 5.714 11 C 0.270 3.730 12 C -0.250 4.250 13 C 0.157 3.843 14 F -0.141 7.141 15 C -0.233 4.233 16 C 0.046 3.954 17 Cl -0.071 7.071 18 C -0.203 4.203 19 H 0.267 0.733 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.397 0.603 23 H 0.132 0.868 24 H 0.133 0.867 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -11.125 0.001 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.125 3.875 10 N -0.334 5.334 11 C 0.157 3.843 12 C -0.275 4.275 13 C 0.137 3.863 14 F -0.120 7.120 15 C -0.256 4.256 16 C 0.018 3.982 17 Cl -0.043 7.043 18 C -0.227 4.227 19 H 0.077 0.923 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.231 0.769 23 H 0.150 0.850 24 H 0.151 0.849 25 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.735 -10.812 0.002 10.837 hybrid contribution 0.736 0.800 0.001 1.087 sum 1.472 -10.012 0.003 10.120 Atomic orbital electron populations 1.69943 1.06097 1.27467 1.48866 1.24922 0.94949 0.99531 0.94453 0.86336 0.79877 0.82746 0.77848 1.19610 1.20696 1.20702 1.21181 0.93433 0.90195 1.53313 0.91779 1.19274 0.88643 0.82497 0.97135 1.45653 1.10215 1.02066 1.75508 1.17495 0.91487 0.85819 0.89492 1.20475 1.00213 0.90352 1.16427 1.16985 0.86140 0.83505 0.99680 1.91465 1.68726 1.57957 1.93825 1.20394 0.90720 0.99304 1.15144 1.20166 0.84154 0.93565 1.00315 1.98353 1.13190 1.95933 1.96775 1.20636 0.94772 0.95683 1.11653 0.92346 0.95614 0.95605 0.76874 0.84976 0.84886 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.66 13.29 55.43 0.74 -23.92 15 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 15 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.54 -14.04 9.28 -34.44 -0.32 -14.36 15 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 15 9 C 0.25 5.86 4.66 -5.19 -0.02 5.84 15 10 N -0.71 -14.03 5.72 -59.82 -0.34 -14.37 15 11 C 0.27 4.85 6.65 -83.81 -0.56 4.29 15 12 C -0.25 -3.97 9.87 -39.31 -0.39 -4.36 15 13 C 0.16 2.42 7.30 -39.45 -0.29 2.13 15 14 F -0.14 -2.09 17.27 2.25 0.04 -2.05 15 15 C -0.23 -3.48 9.80 -39.44 -0.39 -3.87 15 16 C 0.05 0.73 6.31 -39.54 -0.25 0.48 15 17 Cl -0.07 -1.03 28.95 -51.86 -1.50 -2.53 15 18 C -0.20 -3.64 9.09 -39.34 -0.36 -4.00 15 19 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 20 H 0.03 0.66 7.95 -51.93 -0.41 0.25 15 21 H 0.03 0.67 7.95 -51.93 -0.41 0.25 15 22 H 0.40 7.15 8.33 -40.82 -0.34 6.81 15 23 H 0.13 1.86 8.06 -52.49 -0.42 1.44 15 24 H 0.13 1.73 8.06 -52.49 -0.42 1.30 15 25 H 0.14 2.72 6.73 -52.49 -0.35 2.37 15 LS Contribution 247.50 15.07 3.73 3.73 Total: -1.00 -26.22 247.50 -6.93 -33.14 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -1.90 Total: 3.01 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.67 Total: -12.21 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.39 Total: -38.29 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -26.22 -6.93 -33.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230004043.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.643 kcal (2) G-P(sol) polarization free energy of solvation -26.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds