Wall clock time and date at job start Mon Mar 30 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99917 * 2 1 4 4 C 1.53003 * 109.47128 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46932 * 64.75607 * 4 3 2 6 6 C 1.36934 * 119.99472 * 86.80071 * 5 4 3 7 7 H 1.08004 * 119.99886 * 169.32766 * 6 5 4 8 8 C 1.38810 * 120.00230 * 349.31797 * 6 5 4 9 9 N 1.31617 * 120.00175 * 356.44541 * 8 6 5 10 10 Si 1.86802 * 120.00178 * 176.44040 * 8 6 5 11 11 H 1.48506 * 109.47052 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47240 * 119.99951 * 10 8 6 13 13 H 1.48495 * 109.47141 * 240.00403 * 10 8 6 14 14 C 1.46498 * 120.00084 * 266.79195 * 5 4 3 15 15 C 1.52997 * 109.47484 * 264.29895 * 14 5 4 16 16 H 1.09000 * 110.45859 * 302.83523 * 15 14 5 17 17 C 1.54375 * 110.41274 * 180.42035 * 15 14 5 18 18 C 1.54261 * 105.14734 * 217.41827 * 17 15 14 19 19 C 1.54384 * 105.06408 * 359.94814 * 18 17 15 20 20 N 1.48567 * 104.59030 * 23.85241 * 19 18 17 21 21 H 1.09001 * 109.47206 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47372 * 299.99492 * 1 2 3 23 23 H 1.09006 * 109.47090 * 60.00083 * 1 2 3 24 24 H 1.08997 * 109.46834 * 60.00233 * 3 2 1 25 25 H 1.08993 * 109.47248 * 300.00253 * 3 2 1 26 26 H 1.09003 * 109.46699 * 304.76243 * 4 3 2 27 27 H 1.08994 * 109.47005 * 184.76356 * 4 3 2 28 28 H 0.97002 * 120.00583 * 179.97438 * 9 8 6 29 29 H 1.09004 * 109.46928 * 144.29721 * 14 5 4 30 30 H 1.09003 * 109.47095 * 24.30484 * 14 5 4 31 31 H 1.09000 * 110.32755 * 98.47700 * 17 15 14 32 32 H 1.08999 * 110.32329 * 336.36043 * 17 15 14 33 33 H 1.09004 * 110.32428 * 118.84555 * 18 17 15 34 34 H 1.09003 * 110.32749 * 241.04816 * 18 17 15 35 35 H 1.08997 * 110.41370 * 142.62399 * 19 18 17 36 36 H 1.08997 * 110.41201 * 264.95818 * 19 18 17 37 37 H 1.00896 * 110.99700 * 80.07258 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9752 0.5591 -1.2503 6 6 4.2021 1.3302 -2.3590 7 1 4.6874 0.9026 -3.2239 8 6 3.8081 2.6611 -2.3713 9 7 3.1544 3.1635 -1.3453 10 14 4.2060 3.7394 -3.8438 11 1 4.9419 2.9415 -4.8573 12 1 2.9448 4.2511 -4.4379 13 1 5.0471 4.8827 -3.4073 14 6 4.1724 -0.8911 -1.3137 15 6 5.6485 -1.2161 -1.0761 16 1 6.2742 -0.7001 -1.8043 17 6 5.8827 -2.7402 -1.1487 18 6 6.9368 -3.0383 -0.0626 19 6 7.2534 -1.6687 0.5759 20 7 6.0480 -0.8429 0.3070 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6886 1.8463 0.8900 25 1 1.6886 1.8464 -0.8899 26 1 3.8517 0.5717 0.8434 27 1 3.9785 2.1769 0.0847 28 1 2.8794 4.0937 -1.3537 29 1 3.8737 -1.2558 -2.2965 30 1 3.5661 -1.3741 -0.5474 31 1 6.2630 -3.0184 -2.1316 32 1 4.9577 -3.2760 -0.9357 33 1 6.5286 -3.7190 0.6845 34 1 7.8344 -3.4628 -0.5124 35 1 7.4085 -1.7765 1.6494 36 1 8.1323 -1.2253 0.1081 37 1 5.3116 -1.0534 0.9639 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234614895.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:38 Heat of formation + Delta-G solvation = -30.227836 kcal Electronic energy + Delta-G solvation = -17036.498121 eV Core-core repulsion = 14428.192226 eV Total energy + Delta-G solvation = -2608.305895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.73399 -38.55477 -36.80677 -33.32494 -31.14819 -30.61242 -29.65220 -27.05111 -26.42581 -24.34458 -22.29818 -22.01193 -21.02929 -18.66561 -17.31377 -16.74113 -16.55963 -16.17979 -16.07325 -15.58436 -15.18184 -15.08336 -14.68533 -14.48938 -13.38253 -13.29989 -12.93037 -12.72980 -12.51444 -12.43776 -12.34159 -12.30341 -11.96282 -11.91449 -11.68194 -11.61179 -11.37653 -11.29111 -10.61641 -10.06139 -9.34831 -8.59454 -7.61951 -5.07272 1.49715 1.51754 1.59901 2.58259 3.34938 3.40935 3.43775 3.81896 3.99891 4.03810 4.27103 4.52278 4.56330 4.61646 4.66330 4.69619 4.80443 4.83765 4.89527 4.98915 5.03864 5.06137 5.11943 5.17622 5.24059 5.36614 5.53472 5.61223 5.88880 5.96935 6.09713 6.45742 6.62115 6.71694 7.33460 8.04247 8.44392 9.31774 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.010308 C = 0.007624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.988248 B = 2715.781780 C = 3671.877504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.418 6.418 3 C 0.072 3.928 4 C 0.199 3.801 5 N -0.597 5.597 6 C -0.228 4.228 7 H 0.068 0.932 8 C -0.065 4.065 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.275 1.275 12 H -0.297 1.297 13 H -0.297 1.297 14 C 0.162 3.838 15 C 0.058 3.942 16 H 0.054 0.946 17 C -0.147 4.147 18 C -0.146 4.146 19 C 0.037 3.963 20 N -0.670 5.670 21 H 0.096 0.904 22 H 0.040 0.960 23 H 0.023 0.977 24 H 0.012 0.988 25 H 0.057 0.943 26 H 0.021 0.979 27 H 0.078 0.922 28 H 0.242 0.758 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.992 -10.299 3.641 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.338 6.338 3 C -0.006 4.006 4 C 0.073 3.927 5 N -0.317 5.317 6 C -0.358 4.358 7 H 0.086 0.914 8 C -0.257 4.257 9 N -0.586 5.586 10 Si 0.798 3.202 11 H -0.200 1.200 12 H -0.225 1.225 13 H -0.224 1.224 14 C 0.036 3.964 15 C -0.054 4.054 16 H 0.073 0.927 17 C -0.187 4.187 18 C -0.185 4.185 19 C -0.092 4.092 20 N -0.298 5.298 21 H 0.114 0.886 22 H 0.058 0.942 23 H 0.041 0.959 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.402 -9.644 3.488 10.533 hybrid contribution -0.584 0.327 -0.743 1.000 sum 1.817 -9.317 2.745 9.882 Atomic orbital electron populations 1.22694 0.81869 1.02564 0.99153 1.87779 1.19628 1.31046 1.95358 1.23716 0.96987 0.81401 0.98514 1.20677 0.89775 0.97232 0.84991 1.43996 1.77569 1.01698 1.08453 1.19635 1.29367 0.92892 0.93944 0.91416 1.25375 1.01170 0.98808 1.00365 1.70284 1.44586 1.13048 1.30722 0.85168 0.76625 0.78843 0.79603 1.20019 1.22491 1.22432 1.20884 0.92549 0.84158 0.98843 1.23189 0.98094 0.93018 0.91111 0.92745 1.22890 0.99567 0.96264 0.99941 1.22844 0.99174 0.98403 0.98083 1.23066 0.94327 0.91076 1.00780 1.63268 1.07907 1.55387 1.03242 0.88599 0.94186 0.95864 0.96937 0.92526 0.96060 0.90418 0.94812 0.94556 0.93062 0.91141 0.91331 0.90728 0.90325 0.89916 0.91551 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.16 11.01 113.37 1.25 2.40 16 2 O -0.42 -18.31 9.98 -148.98 -1.49 -19.79 16 3 C 0.07 3.46 5.45 71.98 0.39 3.85 16 4 C 0.20 9.93 5.28 86.38 0.46 10.38 16 5 N -0.60 -29.88 2.45 -702.00 -1.72 -31.60 16 6 C -0.23 -12.48 9.78 84.03 0.82 -11.65 16 7 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 8 C -0.07 -3.61 5.32 84.86 0.45 -3.16 16 9 N -0.93 -52.83 7.30 21.65 0.16 -52.67 16 10 Si 0.97 45.80 29.56 68.60 2.03 47.83 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 13 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 14 C 0.16 6.78 4.85 86.38 0.42 7.20 16 15 C 0.06 2.11 3.45 45.03 0.16 2.27 16 16 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 17 C -0.15 -4.01 6.55 31.49 0.21 -3.81 16 18 C -0.15 -3.34 7.00 31.49 0.22 -3.12 16 19 C 0.04 0.99 7.47 86.45 0.65 1.64 16 20 N -0.67 -23.32 7.15 -478.62 -3.42 -26.74 16 21 H 0.10 2.66 8.14 -2.39 -0.02 2.65 16 22 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 3.14 6.11 -2.39 -0.01 3.12 16 26 H 0.02 0.99 7.09 -2.39 -0.02 0.97 16 27 H 0.08 4.39 5.93 -2.39 -0.01 4.38 16 28 H 0.24 13.44 8.31 -92.71 -0.77 12.67 16 29 H 0.04 1.53 8.09 -2.38 -0.02 1.52 16 30 H 0.05 2.10 7.49 -2.39 -0.02 2.08 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.80 7.86 -2.39 -0.02 1.78 16 33 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.33 11.29 7.86 -89.70 -0.71 10.59 16 Total: -1.00 -59.95 291.90 0.90 -59.05 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.33 Total: 17.91 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 5.02 Total: 6.02 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -4.99 Total: -111.01 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.49 Total: -19.79 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -59.95 0.90 -59.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234614895.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.825 kcal (2) G-P(sol) polarization free energy of solvation -59.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds