Wall clock time and date at job start Mon Mar 30 2020 03:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40171 * 119.60603 * 2 1 4 4 H 0.96996 * 120.61106 * 359.97438 * 3 2 1 5 5 C 1.35297 * 118.78582 * 179.97438 * 3 2 1 6 6 O 1.21412 * 120.93605 * 180.02562 * 5 3 2 7 7 C 1.49474 * 118.13086 * 0.02562 * 5 3 2 8 8 O 1.21759 * 120.43791 * 180.02562 * 7 5 3 9 9 N 1.33435 * 119.12572 * 359.72435 * 7 5 3 10 10 C 1.32221 * 121.09716 * 0.53484 * 9 7 5 11 11 S 1.76201 * 118.96595 * 179.75535 * 10 9 7 12 12 C 1.76199 * 99.99986 * 359.72459 * 11 10 9 13 13 H 1.08002 * 120.00405 * 0.02562 * 12 11 10 14 14 C 1.39256 * 119.99936 * 179.72476 * 12 11 10 15 15 N 1.31214 * 119.99862 * 0.27727 * 14 12 11 16 16 Si 1.86798 * 120.00353 * 180.27925 * 14 12 11 17 17 H 1.48504 * 109.46902 * 59.99756 * 16 14 12 18 18 H 1.48498 * 109.47594 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46858 * 299.99992 * 16 14 12 20 20 H 1.09003 * 109.47238 * 270.02352 * 1 2 3 21 21 H 1.09002 * 109.46609 * 30.02101 * 1 2 3 22 22 H 1.08995 * 109.47586 * 150.02306 * 1 2 3 23 23 H 0.97005 * 119.99913 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1575 1.2187 0.0000 4 1 1.6757 2.0605 -0.0004 5 6 3.5104 1.1993 0.0005 6 8 4.1494 2.2317 0.0010 7 6 4.1962 -0.1288 0.0005 8 8 5.4120 -0.1952 0.0014 9 7 3.4585 -1.2407 0.0056 10 6 2.1375 -1.1838 0.0000 11 16 1.2187 -2.6873 0.0006 12 6 2.5397 -3.8532 0.0010 13 1 3.5635 -3.5093 0.0013 14 6 2.2637 -5.2181 0.0073 15 7 1.0199 -5.6359 0.0074 16 14 3.6642 -6.4543 0.0156 17 1 4.4967 -6.2509 1.2284 18 1 3.1089 -7.8315 0.0222 19 1 4.5004 -6.2629 -1.1966 20 1 -0.3634 0.0004 1.0277 21 1 -0.3632 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5134 23 1 0.8276 -6.5867 0.0122 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236089293.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:01 Heat of formation + Delta-G solvation = -2.353420 kcal Electronic energy + Delta-G solvation = -13506.362818 eV Core-core repulsion = 10869.093325 eV Total energy + Delta-G solvation = -2637.269493 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.56911 -37.84389 -37.28299 -33.67187 -32.98957 -32.24631 -26.80589 -26.02022 -24.51091 -23.65233 -19.19681 -18.77244 -17.65512 -17.12267 -16.07162 -15.56560 -15.14857 -14.82899 -14.42732 -14.29608 -13.31779 -13.28896 -12.88941 -11.89489 -11.71196 -11.32140 -11.24244 -11.03352 -10.55645 -10.45041 -10.35381 -9.41778 -9.26550 -8.29592 -7.92825 -7.52784 -6.75652 -4.52837 1.21214 1.41081 2.22610 2.50978 3.14209 3.15401 3.18510 3.38985 3.82620 4.21668 4.59007 4.70696 4.74723 5.00189 5.24610 5.54498 5.74818 6.01723 6.83160 6.99038 7.35007 7.83249 8.25929 8.35243 8.71042 8.80802 10.31120 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.034801 B = 0.009228 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.374041 B = 3033.386978 C = 3822.611732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.404 5.404 3 N -0.508 5.508 4 H 0.415 0.585 5 C 0.462 3.538 6 O -0.508 6.508 7 C 0.494 3.506 8 O -0.479 6.479 9 N -0.604 5.604 10 C 0.375 3.625 11 S 0.220 5.780 12 C -0.548 4.548 13 H 0.124 0.876 14 C 0.083 3.917 15 N -0.868 5.868 16 Si 0.937 3.063 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.266 1.266 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.105 0.895 23 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.325 5.662 -0.100 10.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.216 5.216 3 N -0.262 5.262 4 H 0.259 0.741 5 C 0.242 3.758 6 O -0.376 6.376 7 C 0.266 3.734 8 O -0.351 6.351 9 N -0.363 5.363 10 C 0.010 3.990 11 S 0.457 5.543 12 C -0.696 4.696 13 H 0.142 0.858 14 C -0.129 4.129 15 N -0.501 5.501 16 Si 0.761 3.239 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.190 1.190 20 H 0.095 0.905 21 H 0.101 0.899 22 H 0.123 0.877 23 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.988 5.243 -0.092 9.556 hybrid contribution 1.211 0.847 0.001 1.478 sum -6.777 6.090 -0.091 9.112 Atomic orbital electron populations 1.22275 0.75112 1.05170 1.04039 1.46827 1.04919 0.95202 1.74630 1.46500 1.04670 1.00113 1.74918 0.74147 1.23587 0.80485 0.94909 0.76773 1.90759 1.62512 1.35668 1.48631 1.20805 0.89973 0.83701 0.78872 1.90730 1.12934 1.86406 1.45014 1.69846 1.01469 1.26855 1.38152 1.26986 0.93317 0.90615 0.88058 1.83512 1.08046 0.85955 1.76831 1.23856 0.96134 0.90888 1.58769 0.85797 1.25240 0.97390 0.97841 0.92408 1.69732 1.18557 1.17432 1.44419 0.85889 0.80274 0.77615 0.80103 1.19028 1.20688 1.19026 0.90498 0.89893 0.87685 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.42 59.85 0.62 1.35 14 2 N -0.40 -6.08 3.95 -67.73 -0.27 -6.34 14 3 N -0.51 -7.70 6.42 31.02 0.20 -7.50 14 4 H 0.41 4.62 8.87 -182.55 -1.62 3.00 14 5 C 0.46 9.38 8.14 -11.34 -0.09 9.28 14 6 O -0.51 -11.30 17.85 -10.03 -0.18 -11.47 14 7 C 0.49 11.80 7.98 -12.17 -0.10 11.70 14 8 O -0.48 -12.92 17.86 -10.34 -0.18 -13.10 14 9 N -0.60 -14.22 8.44 -12.54 -0.11 -14.32 14 10 C 0.37 7.35 7.84 -87.91 -0.69 6.66 14 11 S 0.22 4.42 19.52 -107.50 -2.10 2.33 14 12 C -0.55 -13.64 9.26 31.11 0.29 -13.36 14 13 H 0.12 3.31 6.50 -52.49 -0.34 2.97 14 14 C 0.08 2.02 5.50 -17.44 -0.10 1.93 14 15 N -0.87 -21.34 13.21 55.51 0.73 -20.61 14 16 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 14 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 14 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 14 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 14 20 H 0.08 0.60 8.14 -51.93 -0.42 0.18 14 21 H 0.08 0.51 8.14 -51.93 -0.42 0.09 14 22 H 0.10 1.00 6.49 -51.93 -0.34 0.66 14 23 H 0.28 6.48 8.30 -40.82 -0.34 6.14 14 LS Contribution 233.74 15.07 3.52 3.52 Total: -1.00 -32.25 233.74 -5.75 -37.99 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -2.28 Total: -2.77 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: -0.06 Total: 17.57 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.56 Total: -48.78 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.36 Total: -24.58 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -2.10 Total: 2.33 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -32.25 -5.75 -37.99 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236089293.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.638 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds