Wall clock time and date at job start Mon Mar 30 2020 03:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40171 * 119.60603 * 2 1 4 4 H 0.96996 * 120.61106 * 359.97438 * 3 2 1 5 5 C 1.35297 * 118.78582 * 179.97438 * 3 2 1 6 6 O 1.21412 * 120.93605 * 180.02562 * 5 3 2 7 7 C 1.49474 * 118.13086 * 0.02562 * 5 3 2 8 8 O 1.21759 * 120.43791 * 180.02562 * 7 5 3 9 9 N 1.33435 * 119.12572 * 359.72435 * 7 5 3 10 10 C 1.32221 * 121.09716 * 0.53484 * 9 7 5 11 11 S 1.76201 * 118.96595 * 179.75535 * 10 9 7 12 12 C 1.76199 * 99.99986 * 359.72459 * 11 10 9 13 13 H 1.08002 * 120.00405 * 0.02562 * 12 11 10 14 14 C 1.39256 * 119.99936 * 179.72476 * 12 11 10 15 15 N 1.31214 * 119.99862 * 0.27727 * 14 12 11 16 16 Si 1.86798 * 120.00353 * 180.27925 * 14 12 11 17 17 H 1.48504 * 109.46902 * 59.99756 * 16 14 12 18 18 H 1.48498 * 109.47594 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46858 * 299.99992 * 16 14 12 20 20 H 1.09003 * 109.47238 * 270.02352 * 1 2 3 21 21 H 1.09002 * 109.46609 * 30.02101 * 1 2 3 22 22 H 1.08995 * 109.47586 * 150.02306 * 1 2 3 23 23 H 0.97005 * 119.99913 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1575 1.2187 0.0000 4 1 1.6757 2.0605 -0.0004 5 6 3.5104 1.1993 0.0005 6 8 4.1494 2.2317 0.0010 7 6 4.1962 -0.1288 0.0005 8 8 5.4120 -0.1952 0.0014 9 7 3.4585 -1.2407 0.0056 10 6 2.1375 -1.1838 0.0000 11 16 1.2187 -2.6873 0.0006 12 6 2.5397 -3.8532 0.0010 13 1 3.5635 -3.5093 0.0013 14 6 2.2637 -5.2181 0.0073 15 7 1.0199 -5.6359 0.0074 16 14 3.6642 -6.4543 0.0156 17 1 4.4967 -6.2509 1.2284 18 1 3.1089 -7.8315 0.0222 19 1 4.5004 -6.2629 -1.1966 20 1 -0.3634 0.0004 1.0277 21 1 -0.3632 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5134 23 1 0.8276 -6.5867 0.0122 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236089293.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:01 Heat of formation + Delta-G solvation = -27.545767 kcal Electronic energy + Delta-G solvation = -13507.455240 eV Core-core repulsion = 10869.093325 eV Total energy + Delta-G solvation = -2638.361915 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.18067 -39.40458 -39.03703 -35.33320 -34.81804 -33.63859 -28.15834 -27.71556 -26.16147 -25.15843 -20.81145 -20.37101 -19.37737 -18.60184 -17.61009 -17.13701 -16.96338 -16.47725 -16.06826 -15.59611 -15.06480 -14.92731 -13.81345 -13.49029 -13.14448 -13.06155 -12.91463 -12.76732 -12.22529 -12.03181 -12.01584 -11.21584 -11.03499 -9.97883 -9.42122 -9.20166 -8.59090 -6.38075 -0.44122 -0.03401 0.57702 1.01047 1.42480 1.45672 1.51651 1.81910 2.13540 2.49502 2.88557 2.92338 3.21487 4.00420 4.30327 4.52198 4.69317 4.83588 5.38508 5.50586 5.55101 6.31346 6.35962 6.66266 6.95493 7.07537 8.47933 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.034801 B = 0.009228 C = 0.007323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.374041 B = 3033.386978 C = 3822.611732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.382 5.382 3 N -0.475 5.475 4 H 0.444 0.556 5 C 0.467 3.533 6 O -0.531 6.531 7 C 0.479 3.521 8 O -0.534 6.534 9 N -0.644 5.644 10 C 0.375 3.625 11 S 0.263 5.737 12 C -0.588 4.588 13 H 0.098 0.902 14 C 0.053 3.947 15 N -0.885 5.885 16 Si 0.980 3.020 17 H -0.273 1.273 18 H -0.264 1.264 19 H -0.273 1.273 20 H 0.105 0.895 21 H 0.130 0.870 22 H 0.109 0.891 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.883 6.472 -0.084 12.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.191 5.191 3 N -0.231 5.231 4 H 0.293 0.707 5 C 0.246 3.754 6 O -0.402 6.402 7 C 0.254 3.746 8 O -0.410 6.410 9 N -0.406 5.406 10 C 0.009 3.991 11 S 0.499 5.501 12 C -0.736 4.736 13 H 0.116 0.884 14 C -0.157 4.157 15 N -0.519 5.519 16 Si 0.803 3.197 17 H -0.198 1.198 18 H -0.188 1.188 19 H -0.198 1.198 20 H 0.124 0.876 21 H 0.148 0.852 22 H 0.127 0.873 23 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.689 6.090 -0.076 12.303 hybrid contribution 1.800 0.685 -0.004 1.926 sum -8.890 6.774 -0.080 11.177 Atomic orbital electron populations 1.22911 0.70687 1.07658 1.06730 1.47157 1.06820 0.94085 1.71074 1.46085 1.03477 1.01252 1.72267 0.70694 1.22656 0.82006 0.93064 0.77633 1.90755 1.63557 1.35636 1.50203 1.21181 0.89712 0.85338 0.78403 1.90674 1.14902 1.87422 1.47994 1.69762 1.03538 1.28183 1.39115 1.26955 0.92559 0.92204 0.87412 1.82998 1.05302 0.84424 1.77336 1.23954 0.96889 0.92885 1.59887 0.88429 1.25758 0.99012 0.98864 0.92061 1.69721 1.19216 1.18082 1.44850 0.85257 0.78251 0.76981 0.79231 1.19818 1.18770 1.19789 0.87624 0.85216 0.87314 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 10.42 127.77 1.33 2.13 14 2 N -0.38 -10.11 3.95 -368.19 -1.46 -11.56 14 3 N -0.48 -12.76 6.42 -173.83 -1.12 -13.87 14 4 H 0.44 7.69 8.87 -213.28 -1.89 5.79 14 5 C 0.47 18.45 8.14 87.19 0.71 19.16 14 6 O -0.53 -23.25 17.85 11.36 0.20 -23.05 14 7 C 0.48 23.36 7.98 87.48 0.70 24.05 14 8 O -0.53 -30.14 17.86 10.26 0.18 -29.96 14 9 N -0.64 -30.70 8.44 -312.54 -2.64 -33.34 14 10 C 0.37 14.14 7.84 179.40 1.41 15.55 14 11 S 0.26 10.20 19.52 -56.49 -1.10 9.10 14 12 C -0.59 -29.50 9.26 68.06 0.63 -28.87 14 13 H 0.10 5.39 6.50 -2.91 -0.02 5.37 14 14 C 0.05 2.57 5.50 85.03 0.47 3.04 14 15 N -0.88 -42.70 13.21 21.71 0.29 -42.42 14 16 Si 0.98 40.50 29.55 68.60 2.03 42.53 14 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 14 18 H -0.26 -10.01 7.11 99.48 0.71 -9.31 14 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 14 20 H 0.11 1.01 8.14 -2.39 -0.02 0.99 14 21 H 0.13 0.68 8.14 -2.39 -0.02 0.66 14 22 H 0.11 1.54 6.49 -2.39 -0.02 1.53 14 23 H 0.29 12.90 8.30 -92.70 -0.77 12.13 14 Total: -1.00 -72.95 233.74 1.02 -71.93 By element: Atomic # 1 Polarization: -3.80 SS G_CDS: -0.61 Total: -4.42 kcal Atomic # 6 Polarization: 29.81 SS G_CDS: 5.24 Total: 35.06 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -4.92 Total: -101.19 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: 0.39 Total: -53.01 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 10.20 SS G_CDS: -1.10 Total: 9.10 kcal Total: -72.95 1.02 -71.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236089293.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.384 kcal (2) G-P(sol) polarization free energy of solvation -72.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds