Wall clock time and date at job start Mon Mar 30 2020 03:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29454 * 1 3 3 Si 1.86802 * 120.00119 * 2 1 4 4 H 1.48499 * 109.47063 * 239.99649 * 3 2 1 5 5 H 1.48502 * 109.46789 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47203 * 119.99536 * 3 2 1 7 7 C 1.46667 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99478 * 160.77765 * 7 2 1 9 9 C 1.39711 * 120.00020 * 340.78069 * 7 2 1 10 10 C 1.41793 * 120.35981 * 144.21132 * 9 7 2 11 11 F 1.35098 * 120.19375 * 0.03456 * 10 9 7 12 12 C 1.37747 * 119.61443 * 180.02562 * 10 9 7 13 13 C 1.38680 * 120.36903 * 359.97438 * 12 10 9 14 14 N 1.48015 * 119.62345 * 179.97438 * 13 12 10 15 15 O 1.31701 * 120.00415 * 359.97438 * 14 13 12 16 16 O 1.31700 * 120.00039 * 180.02562 * 14 13 12 17 17 C 1.38683 * 120.75503 * 0.02562 * 13 12 10 18 18 C 1.37748 * 120.36564 * 359.97438 * 17 13 12 19 19 F 1.35104 * 120.19117 * 180.02562 * 18 17 13 20 20 H 0.96998 * 119.99447 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.81894 * 180.27864 * 12 10 9 22 22 H 1.07994 * 119.81725 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2945 0.0000 0.0000 3 14 2.2286 1.6177 0.0000 4 1 3.0824 1.6963 -1.2124 5 1 1.2635 2.7464 -0.0006 6 1 3.0823 1.6964 1.2126 7 6 2.0278 -1.2702 0.0006 8 1 3.0627 -1.2963 -0.3074 9 6 1.3877 -2.4462 0.3994 10 6 1.6908 -3.6777 -0.2347 11 9 2.6030 -3.7228 -1.2303 12 6 1.0501 -4.8278 0.1704 13 6 0.1137 -4.7858 1.1924 14 7 -0.5654 -6.0316 1.6142 15 8 -0.2795 -7.1713 1.0193 16 8 -1.4562 -6.0001 2.5836 17 6 -0.1945 -3.5898 1.8232 18 6 0.4277 -2.4213 1.4426 19 9 0.1251 -1.2582 2.0599 20 1 -0.4849 0.8401 -0.0004 21 1 1.2818 -5.7683 -0.3073 22 1 -0.9265 -3.5745 2.6171 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236197847.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:39 Heat of formation + Delta-G solvation = -63.028195 kcal Electronic energy + Delta-G solvation = -15370.422613 eV Core-core repulsion = 12144.388926 eV Total energy + Delta-G solvation = -3226.033687 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.034 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.94672 -47.72460 -38.42152 -36.70083 -34.60875 -33.14055 -31.14835 -29.51718 -27.26161 -24.23708 -21.90141 -21.31305 -18.57529 -17.87106 -17.15563 -16.23674 -15.63510 -15.47712 -15.06140 -14.69458 -14.55464 -14.48790 -14.19884 -13.56195 -12.80363 -12.34677 -12.03530 -11.81759 -11.35560 -11.12355 -10.84145 -10.72001 -10.11270 -10.03707 -9.91101 -9.64035 -8.51011 -8.11627 -7.92880 -5.42089 0.43287 2.00187 2.11074 2.48151 2.52360 2.59195 2.63301 3.19837 3.59768 4.32719 4.91375 5.26681 5.58529 5.66748 5.79083 6.02101 6.14431 6.56118 6.63110 6.91426 6.98389 7.10259 7.33425 7.36119 7.82622 8.10798 8.93408 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.040564 B = 0.008943 C = 0.007569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.096662 B = 3130.346178 C = 3698.311970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.683 5.683 2 C 0.052 3.948 3 Si 0.939 3.061 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.249 1.249 7 C -0.336 4.336 8 H 0.117 0.883 9 C 0.050 3.950 10 C 0.009 3.991 11 F -0.140 7.140 12 C -0.057 4.057 13 C -0.100 4.100 14 N 0.041 4.959 15 O -0.284 6.284 16 O -0.282 6.282 17 C -0.070 4.070 18 C 0.048 3.952 19 F -0.128 7.128 20 H 0.313 0.687 21 H 0.138 0.862 22 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.815 6.572 -1.215 7.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.301 5.301 2 C -0.183 4.183 3 Si 0.759 3.241 4 H -0.175 1.175 5 H -0.189 1.189 6 H -0.172 1.172 7 C -0.359 4.359 8 H 0.135 0.865 9 C 0.045 3.955 10 C -0.013 4.013 11 F -0.119 7.119 12 C -0.078 4.078 13 C -0.199 4.199 14 N 0.477 4.523 15 O -0.448 6.448 16 O -0.447 6.447 17 C -0.091 4.091 18 C 0.026 3.974 19 F -0.107 7.107 20 H 0.127 0.873 21 H 0.156 0.844 22 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.714 6.978 -1.326 8.015 hybrid contribution -0.031 0.414 0.040 0.417 sum 3.683 7.391 -1.286 8.357 Atomic orbital electron populations 1.68973 1.09388 1.33826 1.17865 1.27845 0.95072 1.03155 0.92257 0.85783 0.80282 0.76542 0.81469 1.17474 1.18902 1.17247 1.21477 0.98797 0.89831 1.25787 0.86480 1.17729 0.92975 0.92681 0.92132 1.16918 0.98039 0.93129 0.93199 1.91382 1.64643 1.97010 1.58833 1.20195 0.94424 0.98173 0.95018 1.18625 1.09620 0.82243 1.09404 1.49888 0.99475 1.03384 0.99518 1.96134 1.73418 1.16400 1.58890 1.96139 1.30029 1.95265 1.23293 1.20209 0.98958 0.89783 1.00123 1.16905 1.03227 0.80651 0.96595 1.91397 1.92149 1.46240 1.80885 0.87297 0.84390 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -13.71 11.12 55.99 0.62 -13.09 14 2 C 0.05 0.99 4.70 -15.15 -0.07 0.92 14 3 Si 0.94 13.77 29.68 -169.99 -5.05 8.73 14 4 H -0.25 -3.59 7.11 56.52 0.40 -3.19 14 5 H -0.26 -3.75 7.11 56.52 0.40 -3.35 14 6 H -0.25 -3.68 7.11 56.52 0.40 -3.28 14 7 C -0.34 -6.90 8.84 -35.63 -0.32 -7.21 14 8 H 0.12 2.20 7.99 -52.49 -0.42 1.78 14 9 C 0.05 1.11 5.47 -106.63 -0.58 0.53 14 10 C 0.01 0.20 7.33 -38.40 -0.28 -0.08 14 11 F -0.14 -2.89 16.85 2.25 0.04 -2.85 14 12 C -0.06 -1.25 9.52 -39.60 -0.38 -1.63 14 13 C -0.10 -2.33 6.90 -79.62 -0.55 -2.88 14 14 N 0.04 1.02 4.98 34.12 0.17 1.19 14 15 O -0.28 -7.21 19.12 -31.57 -0.60 -7.82 14 16 O -0.28 -7.23 19.11 -31.57 -0.60 -7.83 14 17 C -0.07 -1.56 9.52 -39.60 -0.38 -1.94 14 18 C 0.05 1.08 6.75 -38.40 -0.26 0.82 14 19 F -0.13 -2.83 14.19 2.25 0.03 -2.80 14 20 H 0.31 5.46 8.27 -40.82 -0.34 5.12 14 21 H 0.14 2.82 7.54 -52.49 -0.40 2.42 14 22 H 0.14 2.91 7.54 -52.49 -0.40 2.51 14 LS Contribution 226.75 15.07 3.42 3.42 Total: -1.00 -25.38 226.75 -5.13 -30.51 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -0.34 Total: 2.01 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.81 Total: -11.47 kcal Atomic # 7 Polarization: -12.70 SS G_CDS: 0.79 Total: -11.90 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -1.21 Total: -15.65 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.07 Total: -5.65 kcal Atomic # 14 Polarization: 13.77 SS G_CDS: -5.05 Total: 8.73 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -25.38 -5.13 -30.51 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236197847.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.517 kcal (2) G-P(sol) polarization free energy of solvation -25.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds