Wall clock time and date at job start Mon Mar 30 2020 03:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29454 * 1 3 3 Si 1.86802 * 120.00119 * 2 1 4 4 H 1.48499 * 109.47063 * 239.99649 * 3 2 1 5 5 H 1.48502 * 109.46789 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47203 * 119.99536 * 3 2 1 7 7 C 1.46667 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99478 * 160.77765 * 7 2 1 9 9 C 1.39711 * 120.00020 * 340.78069 * 7 2 1 10 10 C 1.41793 * 120.35981 * 144.21132 * 9 7 2 11 11 F 1.35098 * 120.19375 * 0.03456 * 10 9 7 12 12 C 1.37747 * 119.61443 * 180.02562 * 10 9 7 13 13 C 1.38680 * 120.36903 * 359.97438 * 12 10 9 14 14 N 1.48015 * 119.62345 * 179.97438 * 13 12 10 15 15 O 1.31701 * 120.00415 * 359.97438 * 14 13 12 16 16 O 1.31700 * 120.00039 * 180.02562 * 14 13 12 17 17 C 1.38683 * 120.75503 * 0.02562 * 13 12 10 18 18 C 1.37748 * 120.36564 * 359.97438 * 17 13 12 19 19 F 1.35104 * 120.19117 * 180.02562 * 18 17 13 20 20 H 0.96998 * 119.99447 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.81894 * 180.27864 * 12 10 9 22 22 H 1.07994 * 119.81725 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2945 0.0000 0.0000 3 14 2.2286 1.6177 0.0000 4 1 3.0824 1.6963 -1.2124 5 1 1.2635 2.7464 -0.0006 6 1 3.0823 1.6964 1.2126 7 6 2.0278 -1.2702 0.0006 8 1 3.0627 -1.2963 -0.3074 9 6 1.3877 -2.4462 0.3994 10 6 1.6908 -3.6777 -0.2347 11 9 2.6030 -3.7228 -1.2303 12 6 1.0501 -4.8278 0.1704 13 6 0.1137 -4.7858 1.1924 14 7 -0.5654 -6.0316 1.6142 15 8 -0.2795 -7.1713 1.0193 16 8 -1.4562 -6.0001 2.5836 17 6 -0.1945 -3.5898 1.8232 18 6 0.4277 -2.4213 1.4426 19 9 0.1251 -1.2582 2.0599 20 1 -0.4849 0.8401 -0.0004 21 1 1.2818 -5.7683 -0.3073 22 1 -0.9265 -3.5745 2.6171 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236197847.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:38 Heat of formation + Delta-G solvation = -76.023285 kcal Electronic energy + Delta-G solvation = -15370.986122 eV Core-core repulsion = 12144.388926 eV Total energy + Delta-G solvation = -3226.597196 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.034 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.67285 -49.53285 -40.13019 -38.41909 -36.28166 -34.88326 -32.88445 -31.24478 -29.02819 -25.97327 -23.64520 -23.03688 -20.25931 -19.62039 -18.89130 -17.85910 -17.33193 -17.21542 -16.79726 -16.28917 -16.27554 -16.18855 -15.95031 -15.17987 -14.24222 -14.03671 -13.67982 -13.31679 -12.84651 -12.74937 -12.47656 -12.06938 -11.88794 -11.70627 -11.52561 -11.46871 -10.24753 -9.88349 -9.50627 -7.15480 -1.43409 0.31263 0.40419 0.80635 1.28433 1.39833 1.53972 1.97644 2.09771 2.60089 3.14351 3.53045 3.84659 3.99383 4.14124 4.32699 4.39727 4.82696 4.93101 5.19833 5.22528 5.38420 5.58794 5.63301 6.06787 6.34985 7.39195 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.040564 B = 0.008943 C = 0.007569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.096662 B = 3130.346178 C = 3698.311970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.694 5.694 2 C 0.010 3.990 3 Si 1.012 2.988 4 H -0.238 1.238 5 H -0.255 1.255 6 H -0.247 1.247 7 C -0.272 4.272 8 H 0.147 0.853 9 C 0.001 3.999 10 C 0.029 3.971 11 F -0.131 7.131 12 C -0.067 4.067 13 C -0.102 4.102 14 N 0.046 4.954 15 O -0.347 6.347 16 O -0.353 6.353 17 C -0.083 4.083 18 C 0.058 3.942 19 F -0.127 7.127 20 H 0.332 0.668 21 H 0.145 0.855 22 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 11.206 -2.711 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.224 4.224 3 Si 0.826 3.174 4 H -0.160 1.160 5 H -0.179 1.179 6 H -0.171 1.171 7 C -0.295 4.295 8 H 0.165 0.835 9 C -0.005 4.005 10 C 0.006 3.994 11 F -0.109 7.109 12 C -0.088 4.088 13 C -0.208 4.208 14 N 0.456 4.544 15 O -0.494 6.494 16 O -0.499 6.499 17 C -0.104 4.104 18 C 0.035 3.965 19 F -0.106 7.106 20 H 0.147 0.853 21 H 0.163 0.837 22 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.930 11.392 -2.753 13.135 hybrid contribution -0.424 -0.166 0.209 0.501 sum 5.507 11.226 -2.544 12.760 Atomic orbital electron populations 1.68960 1.10952 1.36320 1.14927 1.28966 0.95807 1.05846 0.91823 0.84736 0.79010 0.71721 0.81895 1.16040 1.17881 1.17057 1.22518 0.99465 0.90044 1.17466 0.83513 1.17938 0.94764 0.93623 0.94126 1.16841 0.97182 0.92677 0.92709 1.91406 1.64179 1.96973 1.58374 1.20236 0.94693 0.98733 0.95129 1.18815 1.10007 0.81942 1.09989 1.49880 1.00607 1.03610 1.00317 1.96067 1.75368 1.17395 1.60569 1.96076 1.32717 1.95474 1.25605 1.20198 0.99565 0.89838 1.00755 1.16927 1.02574 0.80455 0.96535 1.91394 1.92159 1.46047 1.80966 0.85307 0.83749 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -24.69 11.12 23.24 0.26 -24.43 14 2 C 0.01 0.32 4.70 87.25 0.41 0.73 14 3 Si 1.01 22.48 29.68 68.60 2.04 24.51 14 4 H -0.24 -4.89 7.11 99.48 0.71 -4.19 14 5 H -0.26 -5.39 7.11 99.48 0.71 -4.68 14 6 H -0.25 -5.54 7.11 99.48 0.71 -4.83 14 7 C -0.27 -9.71 8.84 24.83 0.22 -9.49 14 8 H 0.15 4.46 7.99 -2.91 -0.02 4.43 14 9 C 0.00 0.04 5.47 -21.17 -0.12 -0.07 14 10 C 0.03 1.18 7.33 23.03 0.17 1.35 14 11 F -0.13 -4.96 16.85 44.97 0.76 -4.20 14 12 C -0.07 -2.95 9.52 22.26 0.21 -2.74 14 13 C -0.10 -4.92 6.90 36.59 0.25 -4.67 14 14 N 0.05 2.48 4.98 -45.96 -0.23 2.25 14 15 O -0.35 -19.21 19.12 3.51 0.07 -19.14 14 16 O -0.35 -19.82 19.11 3.51 0.07 -19.75 14 17 C -0.08 -3.76 9.52 22.26 0.21 -3.55 14 18 C 0.06 2.50 6.75 23.03 0.16 2.66 14 19 F -0.13 -5.30 14.19 44.97 0.64 -4.66 14 20 H 0.33 9.97 8.27 -92.71 -0.77 9.20 14 21 H 0.14 6.06 7.54 -2.91 -0.02 6.03 14 22 H 0.14 6.08 7.54 -2.91 -0.02 6.06 14 Total: -1.00 -55.58 226.75 6.40 -49.18 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.29 Total: 12.03 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 1.51 Total: -15.79 kcal Atomic # 7 Polarization: -22.21 SS G_CDS: 0.03 Total: -22.18 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: 0.13 Total: -38.90 kcal Atomic # 9 Polarization: -10.26 SS G_CDS: 1.40 Total: -8.86 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: 2.04 Total: 24.51 kcal Total: -55.58 6.40 -49.18 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236197847.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.842 kcal (2) G-P(sol) polarization free energy of solvation -55.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds