Wall clock time and date at job start Mon Mar 30 2020 03:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30511 * 1 3 3 Si 1.86794 * 120.00376 * 2 1 4 4 H 1.48497 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47323 * 300.00230 * 3 2 1 6 6 H 1.48506 * 109.46991 * 60.00043 * 3 2 1 7 7 C 1.40399 * 119.99189 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99305 * 179.97438 * 7 2 1 9 9 C 1.41721 * 120.00590 * 0.02562 * 7 2 1 10 10 O 1.21780 * 119.99893 * 359.97438 * 9 7 2 11 11 C 1.47843 * 120.00280 * 179.97438 * 9 7 2 12 12 N 1.32915 * 119.74808 * 0.02562 * 11 9 7 13 13 C 1.31403 * 121.66372 * 179.97438 * 12 11 9 14 14 C 1.38945 * 120.96508 * 359.97438 * 13 12 11 15 15 Cl 1.73595 * 120.29985 * 180.02562 * 14 13 12 16 16 C 1.38661 * 119.39406 * 0.02562 * 14 13 12 17 17 C 1.38806 * 118.47101 * 359.97438 * 16 14 13 18 18 F 1.35102 * 120.49808 * 179.97438 * 17 16 14 19 19 H 0.97007 * 119.99596 * 0.02562 * 1 2 3 20 20 H 1.07997 * 119.51239 * 180.27998 * 13 12 11 21 21 H 1.07998 * 120.76371 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2392 1.6176 0.0000 4 1 3.6991 1.3462 0.0006 5 1 1.8805 2.3964 -1.2124 6 1 1.8805 2.3964 1.2126 7 6 2.0069 -1.2160 -0.0005 8 1 3.0869 -1.2160 -0.0010 9 6 1.2983 -2.4433 -0.0016 10 8 0.0805 -2.4432 -0.0016 11 6 2.0374 -3.7237 -0.0028 12 7 3.3665 -3.7180 -0.0023 13 6 4.0611 -4.8334 -0.0027 14 6 3.4276 -6.0701 -0.0033 15 17 4.3623 -7.5329 -0.0032 16 6 2.0421 -6.1250 -0.0039 17 6 1.3326 -4.9320 -0.0033 18 9 -0.0184 -4.9377 -0.0044 19 1 -0.4850 0.8401 -0.0004 20 1 5.1401 -4.7883 0.0023 21 1 1.5269 -7.0742 -0.0047 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238596646.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:41 Heat of formation + Delta-G solvation = -59.241140 kcal Electronic energy + Delta-G solvation = -13129.984640 eV Core-core repulsion = 10332.451547 eV Total energy + Delta-G solvation = -2797.533092 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 229.005 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.25639 -39.58177 -36.78730 -36.24681 -32.83220 -32.04684 -30.28510 -27.07226 -24.02733 -23.06084 -20.33878 -17.40986 -17.21867 -16.54975 -15.81387 -15.27012 -15.05081 -14.27556 -13.48525 -13.42893 -13.16123 -12.59461 -12.38849 -12.31744 -11.48995 -11.47484 -11.11141 -10.99734 -10.43448 -10.38050 -9.42055 -9.34753 -9.08511 -8.29331 -7.66282 -6.45787 -5.00303 0.99153 1.34989 2.06147 2.99390 3.10346 3.17036 3.61416 3.94551 4.40752 4.46411 4.79649 4.87231 5.04081 5.54171 5.59309 5.79682 6.06028 6.17931 6.93975 7.16238 8.09136 8.19629 8.60674 8.69684 10.13546 10.35403 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.043856 B = 0.007549 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.303528 B = 3708.121874 C = 4336.584107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.474 4.474 8 H 0.089 0.911 9 C 0.379 3.621 10 O -0.527 6.527 11 C 0.090 3.910 12 N -0.414 5.414 13 C 0.093 3.907 14 C -0.080 4.080 15 Cl -0.065 7.065 16 C -0.119 4.119 17 C 0.083 3.917 18 F -0.106 7.106 19 H 0.277 0.723 20 H 0.165 0.835 21 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 -8.187 -0.004 10.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.154 4.154 3 Si 0.738 3.262 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.505 4.505 8 H 0.108 0.892 9 C 0.274 3.726 10 O -0.415 6.415 11 C -0.049 4.049 12 N -0.124 5.124 13 C -0.067 4.067 14 C -0.109 4.109 15 Cl -0.037 7.037 16 C -0.146 4.146 17 C 0.061 3.939 18 F -0.084 7.084 19 H 0.088 0.912 20 H 0.182 0.818 21 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.888 -7.462 -0.002 10.155 hybrid contribution -0.006 -0.473 -0.002 0.473 sum 6.882 -7.935 -0.004 10.503 Atomic orbital electron populations 1.69972 1.07740 1.28548 1.29101 1.26161 0.94758 1.01508 0.92988 0.86169 0.81005 0.80447 0.78569 1.17985 1.19733 1.19736 1.21084 0.95967 0.90505 1.42924 0.89237 1.17974 0.88200 0.84492 0.81922 1.90606 1.14001 1.86874 1.49984 1.24334 0.89784 0.97522 0.93220 1.68178 1.07105 1.27723 1.09361 1.23013 1.01000 0.85717 0.97004 1.21989 0.91843 0.88818 1.08283 1.98348 1.72671 1.35629 1.97029 1.21429 0.92729 0.98630 1.01819 1.18938 0.78956 0.93711 1.02330 1.91587 1.26826 1.97014 1.92954 0.91194 0.81802 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -20.38 11.73 55.57 0.65 -19.73 14 2 C 0.07 1.85 5.50 -17.30 -0.10 1.75 14 3 Si 0.91 18.97 29.56 -169.99 -5.03 13.94 14 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 14 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 14 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 14 7 C -0.47 -13.01 9.01 -37.44 -0.34 -13.35 14 8 H 0.09 2.32 7.36 -52.49 -0.39 1.93 14 9 C 0.38 10.75 6.91 -34.32 -0.24 10.51 14 10 O -0.53 -16.63 13.86 5.12 0.07 -16.56 14 11 C 0.09 2.13 6.74 -82.85 -0.56 1.58 14 12 N -0.41 -8.71 9.43 -9.64 -0.09 -8.80 14 13 C 0.09 1.54 10.99 -17.47 -0.19 1.35 14 14 C -0.08 -1.23 6.36 -39.16 -0.25 -1.48 14 15 Cl -0.07 -0.81 28.98 -51.86 -1.50 -2.31 14 16 C -0.12 -1.99 9.96 -39.21 -0.39 -2.38 14 17 C 0.08 1.77 7.32 -38.76 -0.28 1.49 14 18 F -0.11 -2.44 15.55 2.25 0.04 -2.41 14 19 H 0.28 6.91 8.29 -40.82 -0.34 6.57 14 20 H 0.16 2.13 8.06 -52.49 -0.42 1.70 14 21 H 0.15 2.03 8.06 -52.49 -0.42 1.61 14 LS Contribution 224.99 15.07 3.39 3.39 Total: -1.00 -30.98 224.99 -5.18 -36.16 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: -0.37 Total: -3.16 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.34 Total: -0.53 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: 0.56 Total: -28.53 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.07 Total: -16.56 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -30.98 -5.18 -36.16 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238596646.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.079 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds